Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   IF561_RS08455 Genome accession   NZ_CP062150
Coordinates   1799779..1802037 (-) Length   752 a.a.
NCBI ID   WP_264400497.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-VB00998     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1794779..1807037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF561_RS08435 (IF561_08430) kdsB 1796071..1796826 (-) 756 WP_264400492.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF561_RS08440 (IF561_08435) - 1796826..1797005 (-) 180 WP_005378451.1 Trm112 family protein -
  IF561_RS08445 (IF561_08440) lpxK 1796986..1797993 (-) 1008 WP_025521559.1 tetraacyldisaccharide 4'-kinase -
  IF561_RS08450 (IF561_08445) msbA 1797999..1799747 (-) 1749 WP_025557351.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  IF561_RS08455 (IF561_08450) comEC 1799779..1802037 (-) 2259 WP_264400497.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF561_RS08460 (IF561_08455) - 1802046..1802555 (+) 510 WP_005456245.1 DUF2062 domain-containing protein -
  IF561_RS08465 (IF561_08460) lolE 1802761..1804005 (-) 1245 WP_015296461.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  IF561_RS08470 (IF561_08465) lolD 1804008..1804715 (-) 708 WP_005481886.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  IF561_RS08475 (IF561_08470) lolC 1804708..1805916 (-) 1209 WP_025622691.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  IF561_RS08480 (IF561_08475) - 1806181..1806750 (+) 570 WP_025504809.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84679.18 Da        Isoelectric Point: 9.5185

>NTDB_id=486450 IF561_RS08455 WP_264400497.1 1799779..1802037(-) (comEC) [Vibrio parahaemolyticus strain 19-VB00998]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVVAIKQVNTHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSHWVIRTSSSWREAIIQTVERDISRLEHFALIKALAFADRTGLTKEDWQSLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLVMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYIALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKEGRLGKLRILLLTQLILSLLIAPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWYLLDIFLVPLSWSVRYAIGTWQPISAEWTFVIAVVSAVLVLRHVMPRYVWMFVC
VIVVMTGLFPKQDNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWQNGSIAEQVITPVLHRRGYSSVDTMILSHADND
HAGGRKVIEQYFSPKHKLSSQSFLHYQPCIAAEKWKWQGLNMEVLWPPKPVVRAYNPHSCVISLEDPSTGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKTSSNPKFINVVEPSLAIASTAKLNQWGMPAPEVVQAYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=486450 IF561_RS08455 WP_264400497.1 1799779..1802037(-) (comEC) [Vibrio parahaemolyticus strain 19-VB00998]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTCCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCGTAGCGATAAAACA
AGTGAATACTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAAAAGCAGTCAATG
GGAAGTGGTGTTGTTGCAAGAGCGGTCGTAACTAAAGATTCACACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAGGC
GATTATTCAAACTGTTGAGCGTGATATTTCTCGCCTTGAGCACTTTGCTCTAATCAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGATTACTGCATCTTGTATCGATTTCTGGTTTACACATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGTTATGCCGCGATATTGGTTTCTACCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATATTGCTTTGAAGTATTGGCTTGTTCATTGGAGTCCATGGCGCGTACTGCTATTAGCTGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
CACAGTGCAAGACTCTAAGGAAGGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATACTGAGCTTATTGA
TTGCCCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATTGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTA
TTTGCTTGACATATTTCTGGTTCCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTGCCGAGT
GGACATTTGTTATTGCTGTAGTGAGTGCCGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGATGACCGGGTTGTTTCCTAAGCAAGATAACCAAACTTGGCGTATTGATGTGCTTGATGTCGGGCATGG
GTTGGCGGTGCTGGTTGAAAAAGAGGGGAGAGTTTTACTCTATGATACGGGCAAGGCTTGGCAAAACGGCAGTATAGCTG
AGCAAGTGATTACGCCAGTACTGCATCGCAGAGGCTACTCAAGTGTAGATACGATGATTTTAAGTCATGCTGATAATGAC
CATGCTGGTGGCCGAAAAGTGATAGAACAGTACTTTTCACCTAAACACAAACTAAGCAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAATGGAAGTGGCAAGGGTTGAACATGGAGGTACTTTGGCCTCCTAAACCTGTAGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGTTAGTGCCGCATCATGGAAGCAA
AACCTCTTCTAACCCTAAGTTTATCAATGTTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAGGCCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGAGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-678)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

99.069

100

0.991
  comEC Vibrio campbellii strain DS40M4

66.489

100

0.665
  comEC Vibrio cholerae strain A1552

41.612

100

0.419