Detailed information NTG0486438

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IF561_RS00180
• Genome accession: NZ_CP062150
• Coordinates: 26873..27742 (-)
• Length: 289 a.a.
• NCBI ID: WP_025533026.1
• Uniprot ID: A0AA41A9T5
• Organism: Vibrio parahaemolyticus strain 19-VB00998
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 21873..32742

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF561_RS00145 (IF561_00145)	rpsP	22907..23155 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
IF561_RS00150 (IF561_00150)	rimM	23184..23732 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
IF561_RS00155 (IF561_00155)	trmD	23760..24503 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
IF561_RS00160 (IF561_00160)	rplS	24545..24898 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
IF561_RS00165 (IF561_00165)	yacG	25227..25421 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
IF561_RS00170 (IF561_00170)	zapD	25490..26230 (-)	741	WP_023624252.1	cell division protein ZapD	-
IF561_RS00175 (IF561_00175)	coaE	26258..26872 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
IF561_RS00180 (IF561_00180)	pilD	26873..27742 (-)	870	WP_025533026.1	A24 family peptidase	Machinery gene
IF561_RS00185 (IF561_00185)	pilC	27807..29030 (-)	1224	WP_029804706.1	type II secretion system F family protein	Machinery gene
IF561_RS00190 (IF561_00190)	pilB	29054..30739 (-)	1686	WP_133280437.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IF561_RS00195 (IF561_00195)	pilA	30739..31197 (-)	459	WP_025536236.1	pilin	Machinery gene
IF561_RS00200 (IF561_00200)	nadC	31460..32347 (-)	888	WP_005479699.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=486438 IF561_RS00180 WP_025533026.1 26873..27742(-) (pilD) [Vibrio parahaemolyticus strain 19-VB00998]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=486438 IF561_RS00180 WP_025533026.1 26873..27742(-) (pilD) [Vibrio parahaemolyticus strain 19-VB00998]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGTATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGGCTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45