Detailed information NTG0486195

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: IFI79_RS03335
• Genome accession: NZ_CP062124
• Coordinates: 690639..691118 (+)
• Length: 159 a.a.
• NCBI ID: WP_014930676.1
• Uniprot ID: -
• Organism: Listeria monocytogenes strain FSL R9-0915
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 685639..696118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IFI79_RS03280 (IFI79_03280)	-	685756..686796 (+)	1041	WP_014930669.1	conserved phage C-terminal domain-containing protein	-
IFI79_RS03285 (IFI79_03285)	-	686798..687154 (+)	357	WP_014930670.1	phage terminase small subunit-related protein	-
IFI79_RS03290 (IFI79_03290)	-	687151..687552 (+)	402	WP_014930671.1	hypothetical protein	-
IFI79_RS03295 (IFI79_03295)	-	687565..687741 (+)	177	WP_014930672.1	hypothetical protein	-
IFI79_RS03300 (IFI79_03300)	-	687755..688279 (+)	525	WP_031670005.1	hypothetical protein	-
IFI79_RS03305 (IFI79_03305)	-	688288..688752 (+)	465	WP_014930674.1	class I SAM-dependent methyltransferase	-
IFI79_RS03310 (IFI79_03310)	-	688749..689309 (+)	561	WP_014601511.1	DUF1642 domain-containing protein	-
IFI79_RS03315 (IFI79_03315)	-	689306..689452 (+)	147	WP_014929526.1	hypothetical protein	-
IFI79_RS03320 (IFI79_03320)	-	689530..689931 (+)	402	WP_014601510.1	hypothetical protein	-
IFI79_RS03325 (IFI79_03325)	-	689928..690137 (+)	210	WP_014601509.1	hypothetical protein	-
IFI79_RS03330 (IFI79_03330)	-	690316..690642 (+)	327	WP_014930675.1	hypothetical protein	-
IFI79_RS03335 (IFI79_03335)	ssbA	690639..691118 (+)	480	WP_014930676.1	single-stranded DNA-binding protein	Machinery gene
IFI79_RS03340 (IFI79_03340)	-	691187..691363 (+)	177	WP_223196704.1	hypothetical protein	-
IFI79_RS03345 (IFI79_03345)	-	691424..691942 (+)	519	WP_014930677.1	sigma factor-like helix-turn-helix DNA-binding protein	-
IFI79_RS03350 (IFI79_03350)	-	691939..692481 (+)	543	WP_012951317.1	tyrosine-type recombinase/integrase	-
IFI79_RS03355 (IFI79_03355)	-	692497..692835 (+)	339	WP_014930678.1	hypothetical protein	-
IFI79_RS03360 (IFI79_03360)	-	693100..693426 (+)	327	WP_014930679.1	hypothetical protein	-
IFI79_RS14960 (IFI79_03365)	-	693423..693785 (+)	363	WP_052199047.1	HNH endonuclease signature motif containing protein	-
IFI79_RS03370 (IFI79_03370)	-	693880..694407 (+)	528	WP_012951321.1	phage terminase small subunit P27 family	-

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 17537.42 Da
• Isoelectric Point: 5.2753

>NTDB_id=486195 IFI79_RS03335 WP_014930676.1 690639..691118(+) (ssbA) [Listeria monocytogenes strain FSL R9-0915]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRTFTNQNGEREADFIQCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNPGRATTNDYQSKANYSNNTQTSSYESGVSQKGGAFVSDSKPIDISDDDLPF

Nucleotide

• Length: 480 bp

>NTDB_id=486195 IFI79_RS03335 WP_014930676.1 690639..691118(+) (ssbA) [Listeria monocytogenes strain FSL R9-0915]
ATGATGAATCGTGTAGTACTTGTAGGACGACTAACGAAAGATCCTGATTTACGATATACGCCAGCTGGTGCAGCAGTTGC
GACTTTTACATTAGCTGTAAATAGAACATTCACTAATCAGAACGGGGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCCGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGTATGGCGGGCGTTGATGGACGCGTACAGACTCGA
AATTACGAAGATAACGACGGCAAACGCGTTTTCGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
CAACCCAGGGAGAGCTACAACGAATGATTATCAAAGCAAAGCTAATTATTCAAACAACACTCAAACAAGCTCATATGAAT
CGGGTGTGAGCCAGAAAGGCGGTGCGTTTGTTAGTGATAGCAAGCCAATCGATATTTCAGATGATGATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	65.698	100	0.711
ssb	Latilactobacillus sakei subsp. sakei 23K	55.429	100	0.61
ssbB	Bacillus subtilis subsp. subtilis str. 168	63.208	66.667	0.421