Detailed information NTG0486175

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: IG194_RS23845
• Genome accession: NZ_CP062122
• Coordinates: 5236048..5238255 (+)
• Length: 735 a.a.
• NCBI ID: WP_176707191.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ADPe
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5231048..5243255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IG194_RS23820 (IG194_23830)	-	5231074..5231652 (-)	579	WP_058488930.1	PilZ domain-containing protein	-
IG194_RS23825 (IG194_23835)	-	5231788..5233041 (+)	1254	WP_009621388.1	lipoprotein-releasing ABC transporter permease subunit	-
IG194_RS23830 (IG194_23840)	lolD	5233034..5233717 (+)	684	WP_009621390.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
IG194_RS23835 (IG194_23845)	-	5233734..5234984 (+)	1251	WP_009621392.1	lipoprotein-releasing ABC transporter permease subunit	-
IG194_RS23840 (IG194_23850)	-	5235381..5235911 (-)	531	WP_043316177.1	DUF2062 domain-containing protein	-
IG194_RS23845 (IG194_23855)	comA	5236048..5238255 (+)	2208	WP_176707191.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
IG194_RS23850 (IG194_23860)	exbB	5238328..5238963 (+)	636	WP_009621398.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
IG194_RS23855 (IG194_23865)	-	5238960..5239406 (+)	447	WP_009621400.1	ExbD/TolR family protein	-
IG194_RS23860 (IG194_23870)	lpxK	5239406..5240404 (+)	999	WP_009621402.1	tetraacyldisaccharide 4'-kinase	-
IG194_RS23865 (IG194_23875)	-	5240445..5240630 (+)	186	WP_009621404.1	Trm112 family protein	-
IG194_RS23870 (IG194_23880)	kdsB	5240651..5241415 (+)	765	WP_058488932.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
IG194_RS23875 (IG194_23885)	-	5241415..5241879 (+)	465	WP_058488933.1	low molecular weight protein-tyrosine-phosphatase	-
IG194_RS23880 (IG194_23890)	murB	5241876..5242895 (+)	1020	WP_058488934.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 735 a.a.
• Molecular weight: 78498.75 Da
• Isoelectric Point: 8.0347

>NTDB_id=486175 IG194_RS23845 WP_176707191.1 5236048..5238255(+) (comA) [Pseudomonas sp. ADPe]
MMALACGLVLLRFLPQLPPLAALLPLVGMALLCLHRNHHAVALFLLGFAWACLFAHVSWEGRLAPELDGRTLWLEGQVAG
LPATADGIVRFELEDVQARLDLPGRIRVSWYGGPEVRAGERWRLAVTLRRPHGLANDFGFDYEAWLAADGIGATGSVKDG
RRLAEATGPMAWREAWKDRLLAVDARGRNAYLVALVLGDGSGLGRDDWDMLQDTGTLHLMVISGSHISLLGGLLYALVAG
LARLGAWPARVPWLPCACAAALAGAWGYGWIAGLQVPALRACLMLSMVLLWRLHFRRQGVWLPLLGALLVVLLVDPLVSL
TPGFWLSFAAVALLVYGFAGRLGRGAGWLAWGRAQWLMALGLAPVLLALGLPLSPAGALANLIAVPCVELLVVPLALVGS
LLLWLPAVGEGLLWLAGGVLDVLLGLLGRLSLYSPAWHPMAPPAWSIALALFGALLCLAPAGLPLRPLGLALLLPMFWPH
STTPPHGHAEVRVLDVGQGLSVLIRTRQHTWLYDAGPRRGEFDLGEVAVLPTLRGLGIERLDMLLLSHADNDHAGGARSV
AAAVPVARIISGEPGRLPDSLPAGPCCNEAWQLDGVRFSTWQWPDATDSNGRSCVLHVEAGGESLLLTGDLPAAGEAAWL
ASHPGLGADWLLAGHHGSRSASSAAFVRQLAPRAALVSRSRHNAHGHPSSEVLQRFAEQGTKVHDVAREGALRVLLGQRG
TLRGVRENAGFWREK

Nucleotide

• Length: 2208 bp

>NTDB_id=486175 IG194_RS23845 WP_176707191.1 5236048..5238255(+) (comA) [Pseudomonas sp. ADPe]
ATGATGGCGCTGGCCTGCGGCCTGGTGCTGCTGCGTTTCCTGCCCCAGTTGCCACCCCTGGCAGCCCTGCTGCCATTGGT
CGGAATGGCGCTGCTGTGCCTGCATCGGAATCATCACGCGGTGGCGCTCTTCCTGCTCGGCTTCGCCTGGGCCTGCCTGT
TCGCCCATGTCTCGTGGGAAGGGCGCCTGGCTCCCGAACTGGATGGGCGGACGCTGTGGCTGGAAGGGCAGGTTGCCGGC
CTGCCGGCTACCGCGGATGGCATCGTCCGCTTCGAGCTGGAGGACGTCCAGGCGCGCCTGGACCTGCCCGGGCGCATCCG
CGTGTCCTGGTATGGCGGCCCGGAGGTGCGGGCCGGGGAGCGCTGGCGCCTGGCGGTCACCCTGCGCCGCCCCCATGGCC
TGGCCAACGACTTCGGTTTCGACTATGAAGCCTGGCTGGCGGCCGACGGCATAGGCGCCACCGGCAGCGTCAAGGATGGC
CGGCGCCTGGCCGAGGCCACGGGACCGATGGCCTGGCGCGAAGCCTGGAAGGACCGGCTGCTGGCGGTGGATGCCCGGGG
ACGCAACGCCTACCTGGTGGCCCTGGTCCTCGGCGACGGCAGCGGCCTGGGCCGGGACGACTGGGACATGCTGCAGGACA
CCGGCACCCTGCACCTGATGGTGATCTCCGGCTCGCACATCTCCCTGCTGGGCGGCTTGCTCTACGCCCTGGTGGCGGGT
CTGGCGCGCCTGGGAGCCTGGCCGGCGCGCGTGCCCTGGCTGCCCTGCGCCTGTGCCGCCGCACTGGCTGGCGCCTGGGG
CTATGGCTGGATCGCCGGGCTGCAGGTGCCGGCATTGCGCGCCTGCCTGATGCTCAGCATGGTGCTGCTGTGGCGCCTGC
ACTTTCGTCGCCAGGGCGTCTGGCTGCCGCTGCTCGGCGCTCTGCTGGTGGTGCTGCTGGTCGATCCATTGGTCAGCCTG
ACGCCCGGCTTCTGGCTGTCCTTCGCCGCCGTGGCGCTGCTCGTCTACGGCTTCGCCGGGCGCCTGGGGCGGGGGGCCGG
CTGGCTGGCCTGGGGGCGCGCGCAGTGGCTCATGGCTCTCGGCCTGGCACCGGTGTTGCTGGCCCTGGGCCTGCCGCTGA
GTCCCGCCGGCGCGCTGGCGAACCTGATCGCGGTGCCCTGTGTCGAGTTGCTGGTGGTGCCCCTGGCGCTGGTCGGCAGC
CTGCTGCTGTGGCTGCCGGCGGTGGGCGAGGGGCTGCTGTGGCTGGCCGGTGGCGTGCTCGACGTGCTGCTGGGCCTGCT
CGGGCGCCTGTCGCTGTATTCCCCGGCCTGGCATCCCATGGCACCGCCGGCCTGGAGCATCGCCCTGGCCCTGTTCGGCG
CGCTGCTGTGCCTGGCGCCGGCCGGGCTGCCGCTGCGCCCGCTGGGCCTGGCGTTGCTGTTGCCGATGTTCTGGCCGCAT
TCCACTACGCCGCCCCATGGCCATGCCGAAGTGCGGGTGCTGGACGTGGGCCAGGGGCTGTCCGTGCTGATCCGCACCCG
CCAGCACACCTGGCTGTACGACGCCGGACCGCGCCGGGGCGAGTTCGACCTCGGCGAGGTGGCGGTGCTGCCGACTCTCC
GTGGCCTGGGCATCGAGCGCCTGGATATGCTGCTGCTCAGCCACGCCGACAATGACCACGCCGGCGGCGCCCGCTCGGTG
GCGGCGGCCGTGCCGGTAGCGCGGATCATCAGCGGCGAGCCCGGGCGTTTGCCGGACAGCCTGCCTGCCGGCCCCTGCTG
CAACGAGGCATGGCAGCTGGACGGCGTGCGCTTCTCCACCTGGCAGTGGCCCGATGCGACGGACAGCAACGGCCGCTCCT
GCGTGCTGCACGTCGAGGCTGGCGGCGAGAGCCTGCTGCTCACCGGCGACCTGCCGGCCGCAGGCGAGGCCGCCTGGCTG
GCCAGCCATCCTGGGCTCGGCGCCGACTGGCTGCTGGCCGGCCACCATGGCAGCCGCAGCGCCTCTTCCGCGGCCTTCGT
CAGGCAACTGGCGCCCCGAGCAGCGCTGGTTTCCCGCTCGCGCCACAACGCCCATGGCCATCCGTCCAGCGAGGTGCTGC
AACGCTTTGCCGAGCAGGGGACGAAGGTGCACGATGTGGCCCGGGAGGGCGCCCTGCGCGTGCTCCTGGGGCAGCGCGGA
ACGCTGCGCGGCGTGCGCGAAAATGCCGGATTCTGGAGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (195-458)

• Metallo-beta-lactamase superfamily (Lactamase_B) (495-677)

• Domain of unknown function (DUF4131) (DUF4131) (17-162)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	56.806	97.959	0.556
comA	Ralstonia pseudosolanacearum GMI1000	35.441	100	0.366