Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IG194_RS23850 Genome accession   NZ_CP062122
Coordinates   5238328..5238963 (+) Length   211 a.a.
NCBI ID   WP_009621398.1    Uniprot ID   A0A1A5CYN3
Organism   Pseudomonas sp. ADPe     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5233328..5243963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG194_RS23835 (IG194_23845) - 5233734..5234984 (+) 1251 WP_009621392.1 lipoprotein-releasing ABC transporter permease subunit -
  IG194_RS23840 (IG194_23850) - 5235381..5235911 (-) 531 WP_043316177.1 DUF2062 domain-containing protein -
  IG194_RS23845 (IG194_23855) comA 5236048..5238255 (+) 2208 WP_176707191.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IG194_RS23850 (IG194_23860) exbB 5238328..5238963 (+) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IG194_RS23855 (IG194_23865) - 5238960..5239406 (+) 447 WP_009621400.1 ExbD/TolR family protein -
  IG194_RS23860 (IG194_23870) lpxK 5239406..5240404 (+) 999 WP_009621402.1 tetraacyldisaccharide 4'-kinase -
  IG194_RS23865 (IG194_23875) - 5240445..5240630 (+) 186 WP_009621404.1 Trm112 family protein -
  IG194_RS23870 (IG194_23880) kdsB 5240651..5241415 (+) 765 WP_058488932.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IG194_RS23875 (IG194_23885) - 5241415..5241879 (+) 465 WP_058488933.1 low molecular weight protein-tyrosine-phosphatase -
  IG194_RS23880 (IG194_23890) murB 5241876..5242895 (+) 1020 WP_058488934.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.12 Da        Isoelectric Point: 8.0527

>NTDB_id=486176 IG194_RS23850 WP_009621398.1 5238328..5238963(+) (exbB) [Pseudomonas sp. ADPe]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=486176 IG194_RS23850 WP_009621398.1 5238328..5238963(+) (exbB) [Pseudomonas sp. ADPe]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGCTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAGCTCAAGGCGTCTTCCCCGCTGGGCGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGGCCGGGTGATCCACGAGATGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCCTCC
GGCCTGATCGTGGCCATCCCGGCGGTGTTCTTCCACCGCTACCTGCTGCGCCGCGTCGATGAGCTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGACCGCGAGGTCGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806