Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IG194_RS19745 Genome accession   NZ_CP062122
Coordinates   4343078..4344667 (-) Length   529 a.a.
NCBI ID   WP_043273654.1    Uniprot ID   A0A1A5D6Q3
Organism   Pseudomonas sp. ADPe     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4338078..4349667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG194_RS19720 (IG194_19730) pilV 4338624..4339196 (-) 573 WP_160329401.1 type IV pilus modification protein PilV -
  IG194_RS32840 - 4339205..4339681 (-) 477 WP_058488534.1 GspH/FimT family pseudopilin -
  IG194_RS19730 (IG194_19740) - 4339831..4340343 (-) 513 WP_058488535.1 GspH/FimT family protein -
  IG194_RS19735 (IG194_19745) thiO 4340522..4341631 (+) 1110 WP_058488536.1 glycine oxidase ThiO -
  IG194_RS19740 (IG194_19750) pilR 4341729..4343066 (-) 1338 WP_009617580.1 sigma-54-dependent transcriptional regulator Regulator
  IG194_RS19745 (IG194_19755) pilS 4343078..4344667 (-) 1590 WP_043273654.1 sensor histidine kinase Regulator
  IG194_RS19750 (IG194_19760) - 4344660..4344890 (-) 231 WP_009617584.1 PP0621 family protein -
  IG194_RS19755 (IG194_19765) - 4345029..4346042 (-) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  IG194_RS19760 (IG194_19770) rluD 4346189..4347148 (+) 960 WP_058488537.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IG194_RS19765 (IG194_19775) pgeF 4347145..4347873 (+) 729 WP_058488538.1 peptidoglycan editing factor PgeF -
  IG194_RS19770 (IG194_19780) - 4347971..4348135 (+) 165 WP_160329402.1 hypothetical protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58463.49 Da        Isoelectric Point: 7.2738

>NTDB_id=486170 IG194_RS19745 WP_043273654.1 4343078..4344667(-) (pilS) [Pseudomonas sp. ADPe]
MAKAIPISGQQGQRILRLYHLYRLSIGLLLVLLISSDLDDRVLNVGQSALFHASCWSYLIVNILIAVLMPTPRQLLPIFL
LALFDILALCGLFYAAGGVPSGIGNLLVVAVGIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPTAINHYVQAGSLGA
LSFAAALLLQGLARRQQLTEHLAEERATTVANLEELNALILQRMRTGILVLDSRHRVLLANQSALGLLAQPELAGKLATE
HCPELLDSLQQWERNPSLRPPSLQAPEGGPMLQPSFIPLRRGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLQESETLDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLRQWLQRFTDEQREGLRGDQ
QIHLQMGGGEIQTRMDPSQLTQVLGNLVQNGLRYSARQNGSGQVWLNLFRDRDSDLPVLEVLDDGPGIAPEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGSFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=486170 IG194_RS19745 WP_043273654.1 4343078..4344667(-) (pilS) [Pseudomonas sp. ADPe]
ATGGCTAAGGCCATCCCCATCAGCGGCCAGCAGGGGCAGCGCATCCTCCGCCTGTACCACCTGTACCGCCTGAGCATCGG
CCTGCTGCTGGTGCTGCTGATTTCCAGCGACCTCGACGACCGCGTGCTCAACGTCGGCCAGTCGGCGCTGTTCCATGCCA
GTTGCTGGAGTTACCTGATCGTCAACATCCTGATCGCCGTGCTGATGCCGACGCCGCGCCAGCTGCTGCCGATCTTCCTC
CTGGCGCTGTTCGACATCCTCGCGCTGTGCGGCCTGTTCTACGCCGCCGGCGGCGTGCCCAGCGGCATCGGCAACCTGCT
GGTGGTGGCGGTGGGCATCGCCAACATCCTGCTGCGCGGACGCATCGGCCTGCTGATCGCCGCCGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCAGCCCACGGCGATCAACCACTACGTCCAGGCCGGCAGCCTCGGCGCC
CTGAGCTTCGCCGCCGCGCTGCTGCTGCAGGGCCTGGCGCGGCGCCAGCAACTCACCGAGCACCTGGCCGAGGAACGCGC
CACCACCGTGGCCAACCTCGAAGAACTCAACGCCCTCATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACAGCC
GGCACCGCGTGCTGCTGGCCAACCAGAGCGCCCTGGGCCTGCTGGCCCAGCCGGAACTGGCCGGCAAGCTCGCCACCGAG
CATTGCCCGGAGCTGCTCGACAGCCTGCAGCAGTGGGAGCGCAACCCCTCGCTGCGCCCGCCCAGCCTGCAGGCGCCCGA
AGGCGGCCCCATGCTGCAGCCGAGCTTCATCCCGCTGCGCCGCGGCGAGGAGCAGCACACCCTGGTGTTCCTCGAAGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCGGCCCTGGGCCGGCTCACCGCCGGCATCGCCCACGAGATC
CGCAACCCCCTGGGCGCCATCAGCCACGCCGCGCAGCTGCTGCAGGAATCCGAAACGCTCGACGCCCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTGATCGAGAACGTCCTGCAACTGTCGCGGCGACGCCAGG
CCGAGCCGCAACAGCTGGACCTCAGGCAGTGGCTGCAACGCTTCACCGACGAGCAGCGCGAAGGCCTGCGCGGCGACCAG
CAGATCCACCTGCAAATGGGCGGCGGCGAGATCCAGACGCGCATGGACCCCAGCCAACTCACCCAGGTGCTGGGTAACCT
GGTGCAGAATGGGTTACGGTACAGTGCCCGGCAGAACGGCAGCGGCCAGGTGTGGTTGAACCTGTTCCGCGACCGGGACA
GCGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCCCCGGCATCGCCCCGGAGCAGTTGGGCAAGCTGTTCGAACCCTTC
TTCACCACCGAGAGCAAGGGCACCGGGCTGGGCCTGTACATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCTCGCATCGA
CTTCAAGAACCGCGACGAAGGCGGTGGCAGCTTCCGCATCACCTTCGCCCACCCGCGCAAGCAGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

73.295

99.811

0.732