Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IG194_RS19740 Genome accession   NZ_CP062122
Coordinates   4341729..4343066 (-) Length   445 a.a.
NCBI ID   WP_009617580.1    Uniprot ID   A0A1A5D7F7
Organism   Pseudomonas sp. ADPe     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4336729..4348066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG194_RS19710 (IG194_19720) - 4337297..4337869 (-) 573 WP_058488531.1 PilX N-terminal domain-containing pilus assembly protein -
  IG194_RS19715 (IG194_19725) - 4337866..4338612 (-) 747 WP_058488532.1 PilW family protein -
  IG194_RS19720 (IG194_19730) pilV 4338624..4339196 (-) 573 WP_160329401.1 type IV pilus modification protein PilV -
  IG194_RS32840 - 4339205..4339681 (-) 477 WP_058488534.1 GspH/FimT family pseudopilin -
  IG194_RS19730 (IG194_19740) - 4339831..4340343 (-) 513 WP_058488535.1 GspH/FimT family protein -
  IG194_RS19735 (IG194_19745) thiO 4340522..4341631 (+) 1110 WP_058488536.1 glycine oxidase ThiO -
  IG194_RS19740 (IG194_19750) pilR 4341729..4343066 (-) 1338 WP_009617580.1 sigma-54-dependent transcriptional regulator Regulator
  IG194_RS19745 (IG194_19755) pilS 4343078..4344667 (-) 1590 WP_043273654.1 sensor histidine kinase Regulator
  IG194_RS19750 (IG194_19760) - 4344660..4344890 (-) 231 WP_009617584.1 PP0621 family protein -
  IG194_RS19755 (IG194_19765) - 4345029..4346042 (-) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  IG194_RS19760 (IG194_19770) rluD 4346189..4347148 (+) 960 WP_058488537.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IG194_RS19765 (IG194_19775) pgeF 4347145..4347873 (+) 729 WP_058488538.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49524.78 Da        Isoelectric Point: 5.6352

>NTDB_id=486169 IG194_RS19740 WP_009617580.1 4341729..4343066(-) (pilR) [Pseudomonas sp. ADPe]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPNDLRFAEATGGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=486169 IG194_RS19740 WP_009617580.1 4341729..4343066(-) (pilR) [Pseudomonas sp. ADPe]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCACTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAAGACGCGCCGGTGGACAACC
GCCTGCTGGGCGATTCGCCGCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAACAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGCGGCGCCATTCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAATGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCC
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCGGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGCGTGCTCTGCGCCACCCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAGCGACAGCGGCCTGGCCGCGGCACAGGTCAGCCCCGAAGCTCTGGAAAAGCTCAAGAGCTACCG
CTTCCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAGGACGATGTCATCCAGCCCA
ACGACCTTCGTTTCGCCGAGGCCACCGGCGGCGGCGAAAGCGGCGAGGCCAGCCTGGCGCAGATCGACAATCTCGAGGAT
TACCTCGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCCGCAGCCCAGCG
ATTGGGTCTGACGTTCCGCTCGATGCGCTATCGCTTGAAGAAGCTGGGTATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D7F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.764

100

0.888
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515