Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JAB4_RS26285 Genome accession   NZ_CP062062
Coordinates   5771562..5772641 (-) Length   359 a.a.
NCBI ID   WP_070218585.1    Uniprot ID   A0A853T3J5
Organism   Janthinobacterium sp. HH102     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5766562..5777641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAB4_RS26275 (JAB4_051820) - 5767630..5770581 (-) 2952 WP_070218583.1 ribonucleoside-diphosphate reductase subunit alpha -
  JAB4_RS26280 (JAB4_051830) ampD 5770973..5771584 (-) 612 WP_070218584.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  JAB4_RS26285 (JAB4_051840) pilR 5771562..5772641 (-) 1080 WP_070218585.1 sigma-54 dependent transcriptional regulator Regulator
  JAB4_RS26290 (JAB4_051850) - 5772761..5773015 (-) 255 WP_070218586.1 PP0621 family protein -
  JAB4_RS26295 (JAB4_051860) ccsA 5773012..5773815 (-) 804 WP_070218587.1 cytochrome c biogenesis protein CcsA -
  JAB4_RS26300 (JAB4_051870) - 5774149..5774688 (+) 540 WP_139143568.1 hypothetical protein -
  JAB4_RS26305 (JAB4_051880) - 5774758..5775687 (-) 930 WP_139143579.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38699.98 Da        Isoelectric Point: 9.4826

>NTDB_id=485985 JAB4_RS26285 WP_070218585.1 5771562..5772641(-) (pilR) [Janthinobacterium sp. HH102]
MSSPRTSQQTVTTTGMPPAPQLSGNSLPMQALRAQISRIARCGAPVAIRGESGTGKELAARAIHAQGARAGFPFIAVNCG
AIPEALMEAEFFGCRPGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRVLQERRVRKLGGSADEAVDVRILC
ASQHGLARGVAAGTFRQDLFYRLNVIELALPPLRERRGDLQVLCEVILARLSPRRAVSLAPPVLAALAGYAFPGNVRELE
NVLERALAFADGGVIALDGLALPSAPGSMPLRAAPALPDLPERQLCLPGMAAYGVGSVLPLDVYLRQAERDMIMQALVQA
RYHRARAARQLGLSVRQLRYRMQKLTIQEALLDERMDDR

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=485985 JAB4_RS26285 WP_070218585.1 5771562..5772641(-) (pilR) [Janthinobacterium sp. HH102]
ATGTCCAGTCCCCGCACCAGCCAGCAGACCGTGACCACCACCGGCATGCCGCCGGCGCCGCAACTGAGCGGTAATTCCTT
GCCCATGCAGGCGCTGCGTGCGCAGATAAGCCGCATCGCCCGCTGCGGCGCGCCGGTGGCCATCCGCGGCGAATCAGGCA
CGGGCAAGGAACTGGCGGCGCGCGCCATCCATGCGCAGGGCGCGCGCGCCGGCTTCCCGTTTATCGCCGTCAACTGCGGC
GCCATACCCGAAGCGCTGATGGAAGCGGAATTCTTCGGCTGCCGCCCGGGCGCCTACACGGGCGCGCTGCACGAGCGCCA
GGGCTTGTTCCAGGCGGCCCATGGCGGCAGCCTGCTGCTCGACGAAGTCGACGATCTGCCGCTGGCCATGCAGGTGAAAC
TGTTGCGCGTGCTGCAGGAGCGCCGCGTGCGCAAGCTGGGCGGCAGTGCCGACGAAGCCGTCGACGTGCGCATCCTGTGC
GCCAGCCAGCATGGCCTGGCGCGCGGCGTGGCCGCCGGCACCTTTCGCCAGGATCTGTTTTACCGCCTCAATGTGATCGA
ACTGGCGCTGCCGCCGCTGCGCGAACGGCGCGGCGATCTGCAGGTATTATGTGAGGTGATCCTGGCGCGCCTGTCGCCAC
GCCGGGCCGTGAGCTTGGCGCCGCCCGTGCTGGCGGCCCTGGCCGGGTATGCGTTTCCCGGCAATGTGCGCGAACTGGAA
AACGTGCTGGAGCGGGCACTGGCCTTTGCCGACGGCGGCGTGATCGCGCTCGACGGGCTGGCCTTGCCATCCGCGCCGGG
CAGCATGCCGTTGCGGGCGGCGCCGGCATTGCCGGACTTGCCGGAACGGCAACTGTGCCTGCCCGGCATGGCGGCATATG
GCGTGGGCTCGGTCCTGCCGCTGGACGTGTATTTGCGTCAGGCCGAGCGCGACATGATCATGCAGGCGCTGGTCCAGGCG
CGTTATCACCGCGCACGGGCGGCGCGCCAGCTGGGCCTGAGCGTGCGCCAGCTGCGTTACCGCATGCAGAAATTGACGAT
ACAGGAAGCATTACTTGATGAGCGGATGGACGATAGATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(23-188)

Bacterial regulatory protein, Fis family (HTH_8)

(305-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853T3J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.096

93.036

0.485
  pilR Acinetobacter baumannii strain A118

42.69

95.265

0.407
  luxO Vibrio cholerae strain A1552

39.877

90.808

0.362