Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IF103_RS07075 Genome accession   NZ_CP061944
Coordinates   1590444..1592681 (+) Length   745 a.a.
NCBI ID   WP_202675982.1    Uniprot ID   -
Organism   Pseudomonas sp. SK2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1585444..1597681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF103_RS07055 (IF103_07050) - 1587321..1587944 (+) 624 WP_023379388.1 glutathione S-transferase -
  IF103_RS07060 (IF103_07055) - 1588077..1589009 (+) 933 WP_023379389.1 ABC transporter ATP-binding protein -
  IF103_RS07065 (IF103_07060) - 1589006..1589785 (+) 780 WP_023379390.1 ABC transporter permease -
  IF103_RS07070 (IF103_07065) - 1589669..1590301 (-) 633 WP_023379391.1 DUF2062 domain-containing protein -
  IF103_RS07075 (IF103_07070) comA 1590444..1592681 (+) 2238 WP_202675982.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF103_RS07080 (IF103_07075) exbB 1592808..1593443 (+) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IF103_RS07085 (IF103_07080) - 1593440..1593874 (+) 435 WP_023379395.1 biopolymer transporter ExbD -
  IF103_RS07090 (IF103_07085) lpxK 1593874..1594875 (+) 1002 WP_023379396.1 tetraacyldisaccharide 4'-kinase -
  IF103_RS07095 (IF103_07090) - 1594920..1595105 (+) 186 WP_003247142.1 Trm112 family protein -
  IF103_RS07100 (IF103_07095) kdsB 1595102..1595866 (+) 765 WP_202675983.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF103_RS07105 (IF103_07100) - 1595866..1596330 (+) 465 WP_104882033.1 low molecular weight protein-tyrosine-phosphatase -
  IF103_RS07110 (IF103_07105) murB 1596327..1597346 (+) 1020 WP_202675984.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 80556.60 Da        Isoelectric Point: 10.4487

>NTDB_id=485676 IF103_RS07075 WP_202675982.1 1590444..1592681(+) (comA) [Pseudomonas sp. SK2]
MRKGMLALAIGLLCLGFLPALPSVGWLLLLLCCGLGCLCVRWWPVACFLLGVCWACWSAQQALDDRLAPQLDGRTLWLEG
RVVGLPTRTAQGVRFELSQPLSRRAELPTRLQLSWFDGPPLRAGEHWRLAVTLQRPTGLLNPHGPDREASLLARRIGATG
TVKAGEKLSSVAGSWRDQLRQRLLAVQAQGREAALVALVLGDGAALARDDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPHRQPWLPWACGLAMAAALGYGGLAGWGVPVQRACLMLAVVLAWRLRFRHIGSGIPLLLALIAVLLFEPL
AALLPGFWLSFAAVAVLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLFAVPLISLTVLPLAL
LGTLLLPLGSVGEGLLWLAGGLLELLFWLLGKVAGWRSAWMPAALPLWAWLLVAGGALLVLLPRGVPLRGLGGLMLLALW
VPPEQVPQGQVEVWQLDVGQGLAVLLRTRTHSLLYDAGPARGDSDLGEWVVLPTLRKLGVSRLDMMLISHAHADHAGGAQ
AVARGLPIGRLLAGEAQALSGAQPCVSDERWEWDGVRFSLWRWPEAQGSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AASEQPDIDWLQSPHHGSRTSSTEAFIKATKPRGVLISRGRNNGFGHPHPQVIERYRRHGVVIHDTAVEGALRLRLGHRG
GVEGLRAQRRFWRAAAPSPSSQVPR

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=485676 IF103_RS07075 WP_202675982.1 1590444..1592681(+) (comA) [Pseudomonas sp. SK2]
ATGCGCAAAGGGATGCTTGCGCTCGCCATTGGGCTGTTGTGCCTGGGGTTTCTGCCGGCCTTGCCGTCGGTCGGCTGGCT
ATTGCTGTTGCTGTGCTGTGGCTTGGGCTGCCTGTGTGTTCGGTGGTGGCCGGTCGCCTGTTTTCTGCTGGGCGTGTGCT
GGGCCTGCTGGTCGGCCCAGCAGGCCCTGGATGATCGGTTGGCGCCGCAGCTCGATGGCCGTACGTTATGGCTGGAGGGC
AGGGTGGTCGGGTTGCCGACTCGCACCGCGCAAGGCGTGCGTTTTGAGTTGTCGCAGCCACTCTCGCGCCGAGCCGAGTT
ACCGACCCGTCTGCAACTGAGCTGGTTCGACGGTCCGCCGCTGCGCGCGGGCGAACACTGGCGTCTGGCCGTGACCTTGC
AGCGTCCGACAGGCTTGCTCAACCCCCATGGCCCGGACCGCGAGGCAAGCCTGTTGGCCCGACGGATCGGCGCAACCGGC
ACGGTCAAGGCCGGCGAGAAGCTGTCGTCCGTAGCGGGCAGTTGGCGCGACCAACTGCGTCAGCGGCTGCTCGCGGTCCA
GGCACAGGGCCGTGAAGCCGCGCTGGTTGCCTTGGTGTTGGGCGATGGAGCGGCATTGGCCCGGGACGATTGGCAAACCT
TGCAGGCCACGGGCACGGTGCACTTGCTGGTCATCTCCGGGCAACACATCGGTCTGGTGGCCGGCCTGCTGTACGGGTTG
GTCGCCGGGCTGGCGCGCTGGGGGCTCTGGCCTCATCGCCAGCCTTGGCTGCCGTGGGCCTGTGGCCTGGCCATGGCGGC
GGCGCTGGGGTATGGCGGGCTGGCGGGGTGGGGCGTGCCGGTGCAGCGAGCCTGTTTGATGTTGGCCGTGGTACTGGCCT
GGCGCCTGCGCTTCCGCCACATCGGTTCCGGGATACCCTTGCTGTTGGCGCTCATCGCGGTGCTGTTGTTCGAGCCATTG
GCTGCGTTGTTGCCCGGGTTCTGGTTGTCTTTCGCCGCGGTGGCCGTACTCATTTACTGCTTCAGCGCACGTCTGGGTGG
CTGGCGACCCTGGCAAGCCTGGACCCGTGCGCAGTGGGTAATCGCCATTGGCCTGCTGCCAGTGTTGCTCGCCACAGGGC
TGCCGGTCAGCCTGAGTGCGCCCCTGGCCAACCTCTTTGCAGTGCCCTTGATCAGCCTGACGGTGTTGCCGCTGGCGTTG
CTCGGCACGCTGCTGCTGCCATTGGGCAGTGTGGGCGAGGGCTTGCTGTGGCTGGCGGGTGGCTTGTTGGAGCTGCTCTT
CTGGCTTTTGGGCAAGGTGGCGGGTTGGCGTTCTGCCTGGATGCCCGCTGCATTGCCCCTGTGGGCATGGCTGTTGGTGG
CGGGCGGGGCACTGCTGGTGTTGTTGCCCAGAGGCGTGCCACTGCGTGGCTTGGGTGGGTTGATGCTGCTGGCCTTGTGG
GTACCGCCAGAGCAGGTGCCGCAGGGGCAGGTGGAGGTCTGGCAATTGGATGTCGGCCAAGGGTTGGCGGTACTGCTGCG
AACCCGAACCCACAGCCTTCTGTACGATGCAGGGCCGGCACGCGGTGACAGCGACCTGGGTGAATGGGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGGGTGAGCCGCCTGGACATGATGCTGATCAGCCATGCCCATGCCGACCACGCCGGTGGCGCGCAG
GCTGTGGCGCGCGGGTTGCCCATCGGGCGCCTGCTGGCGGGAGAGGCACAGGCGCTGTCTGGAGCGCAGCCCTGCGTCAG
CGATGAGCGCTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCGATGGCCCGAGGCGCAAGGCAGCAATGACCGCTCTT
GCGTGCTACTGGTCGAGGCGCAAGGCGAGCGGCTGCTTTTGGCGGGTGACATGGAGGCGGGTGCCGAGCGTGCCTGGCTG
GCCGCCAGCGAGCAGCCCGACATCGACTGGTTGCAATCGCCCCATCACGGTAGCCGCACGTCGTCCACCGAGGCTTTCAT
CAAGGCCACCAAGCCGCGTGGCGTGTTGATTTCGCGAGGGCGCAACAATGGGTTTGGCCATCCGCACCCGCAGGTGATCG
AACGCTACCGGCGCCATGGCGTGGTGATCCATGATACGGCGGTGGAGGGGGCATTGCGCTTGCGCCTGGGGCATCGCGGT
GGGGTAGAGGGCCTGCGTGCGCAGCGGCGTTTCTGGCGTGCGGCAGCCCCCTCGCCATCCAGCCAGGTACCGCGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.192

96.376

0.57
  comA Ralstonia pseudosolanacearum GMI1000

35.606

100

0.379