Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IF103_RS07080 Genome accession   NZ_CP061944
Coordinates   1592808..1593443 (+) Length   211 a.a.
NCBI ID   WP_023379394.1    Uniprot ID   A0A2G8MZK3
Organism   Pseudomonas sp. SK2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587808..1598443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF103_RS07060 (IF103_07055) - 1588077..1589009 (+) 933 WP_023379389.1 ABC transporter ATP-binding protein -
  IF103_RS07065 (IF103_07060) - 1589006..1589785 (+) 780 WP_023379390.1 ABC transporter permease -
  IF103_RS07070 (IF103_07065) - 1589669..1590301 (-) 633 WP_023379391.1 DUF2062 domain-containing protein -
  IF103_RS07075 (IF103_07070) comA 1590444..1592681 (+) 2238 WP_202675982.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF103_RS07080 (IF103_07075) exbB 1592808..1593443 (+) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IF103_RS07085 (IF103_07080) - 1593440..1593874 (+) 435 WP_023379395.1 biopolymer transporter ExbD -
  IF103_RS07090 (IF103_07085) lpxK 1593874..1594875 (+) 1002 WP_023379396.1 tetraacyldisaccharide 4'-kinase -
  IF103_RS07095 (IF103_07090) - 1594920..1595105 (+) 186 WP_003247142.1 Trm112 family protein -
  IF103_RS07100 (IF103_07095) kdsB 1595102..1595866 (+) 765 WP_202675983.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF103_RS07105 (IF103_07100) - 1595866..1596330 (+) 465 WP_104882033.1 low molecular weight protein-tyrosine-phosphatase -
  IF103_RS07110 (IF103_07105) murB 1596327..1597346 (+) 1020 WP_202675984.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.11 Da        Isoelectric Point: 7.3616

>NTDB_id=485677 IF103_RS07080 WP_023379394.1 1592808..1593443(+) (exbB) [Pseudomonas sp. SK2]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=485677 IF103_RS07080 WP_023379394.1 1592808..1593443(+) (exbB) [Pseudomonas sp. SK2]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACTCCGCCGCACCTGTTGGGCCAGGTGTGGATCTGGATCAAGGACA
AACAGCTTACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCGCCGCTGGGTGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAACTGGAGCGCTACAT
CAGCACCTTGGGCACCATCGCCGCCATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAATGCTGCCGTGTTGGCCGGGGGGATCTCCAAGGCCCTGGTCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCATCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8MZK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829