Detailed information NTG0485498

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: J9312_RS13930
• Genome accession: NZ_CP072845
• Coordinates: 2576248..2576853 (-)
• Length: 201 a.a.
• NCBI ID: WP_003229717.1
• Uniprot ID: O05392
• Organism: Bacillus subtilis strain XP
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2571248..2581853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9312_RS13900 (J9312_13800)	-	2572061..2572450 (+)	390	WP_014477528.1	TIGR04086 family membrane protein	-
J9312_RS13905 (J9312_13805)	yajC	2572507..2572773 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
J9312_RS13910 (J9312_13810)	tgt	2572810..2573955 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
J9312_RS13915 (J9312_13815)	queA	2573982..2575010 (-)	1029	WP_014477530.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
J9312_RS13920 (J9312_13820)	yrzS	2575040..2575240 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
J9312_RS13925 (J9312_13825)	ruvB	2575233..2576237 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
J9312_RS13930 (J9312_13830)	ruvA	2576248..2576853 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
J9312_RS13935 (J9312_13835)	bofC	2576992..2577504 (-)	513	WP_014480438.1	sporulation cell-cell signaling protein BofC	-
J9312_RS13940 (J9312_13840)	csbX	2577552..2578859 (-)	1308	WP_014480439.1	MFS transporter	-
J9312_RS13945 (J9312_13845)	iolG	2578930..2579955 (-)	1026	WP_014480440.1	inositol 2-dehydrogenase	-
J9312_RS13950 (J9312_13850)	yrzF	2580193..2580840 (+)	648	WP_014480441.1	phosphotransferase	-
J9312_RS13955 (J9312_13855)	-	2580886..2581008 (-)	123	WP_003229707.1	hypothetical protein	-
J9312_RS13965 (J9312_13860)	-	2581171..2581539 (+)	369	WP_186437837.1	DUF5412 family protein	-
J9312_RS13970 (J9312_13865)	-	2581546..2581686 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22584.08 Da
• Isoelectric Point: 5.4072

>NTDB_id=485498 J9312_RS13930 WP_003229717.1 2576248..2576853(-) (ruvA) [Bacillus subtilis strain XP]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=485498 J9312_RS13930 WP_003229717.1 2576248..2576853(-) (ruvA) [Bacillus subtilis strain XP]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: O05392

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408