Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IE322_RS14370 Genome accession   NZ_CP061848
Coordinates   3163678..3165891 (-) Length   737 a.a.
NCBI ID   WP_189121685.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain C3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3158678..3170891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE322_RS14335 (IE322_14335) murB 3158720..3159739 (-) 1020 WP_015269404.1 UDP-N-acetylmuramate dehydrogenase -
  IE322_RS14340 (IE322_14340) - 3159736..3160200 (-) 465 WP_015269403.1 low molecular weight protein-tyrosine-phosphatase -
  IE322_RS14345 (IE322_14345) kdsB 3160200..3160964 (-) 765 WP_015269402.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IE322_RS14350 (IE322_14350) - 3160961..3161146 (-) 186 WP_011532874.1 Trm112 family protein -
  IE322_RS14355 (IE322_14355) lpxK 3161191..3162192 (-) 1002 WP_015269401.1 tetraacyldisaccharide 4'-kinase -
  IE322_RS14360 (IE322_14360) - 3162192..3162626 (-) 435 WP_013971564.1 biopolymer transporter ExbD -
  IE322_RS14365 (IE322_14365) exbB 3162623..3163258 (-) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IE322_RS14370 (IE322_14370) comA 3163678..3165891 (-) 2214 WP_189121685.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IE322_RS14375 (IE322_14375) - 3166034..3166540 (+) 507 Protein_2850 DUF2062 domain-containing protein -
  IE322_RS14380 (IE322_14380) - 3166550..3167329 (-) 780 WP_015269397.1 ABC transporter permease -
  IE322_RS14385 (IE322_14385) - 3167326..3168258 (-) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  IE322_RS14390 (IE322_14390) - 3168403..3169026 (-) 624 WP_015269396.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79809.86 Da        Isoelectric Point: 10.5441

>NTDB_id=485096 IE322_RS14370 WP_189121685.1 3163678..3165891(-) (comA) [Pseudomonas asiatica strain C3]
MRTGMFALALGLLCLGFLPGLPSVGWLVLLAVAGGIGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVVGGWRDTLRQRLLAVEANGRQTALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGATLPLLLALIAVLLVEPL
AALLPGFWLSFAAVATLVYCFSARLGSWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLELVAQQQSAWLPAVLPLWAWLLVCLGTLLVLMPRGVPLRGLGGVMLLALW
VPRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGRLDLMLVSHAHADHAGGAG
AIMRGLPVERVIGGELLDDLQLQPCVSGEQWMWDGVRFSMWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLG
EVEGVRGQRRFWRVRVQ

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=485096 IE322_RS14370 WP_189121685.1 3163678..3165891(-) (comA) [Pseudomonas asiatica strain C3]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGGATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGCCGGTGGCATCGGCCTGTTTACCCGGCTGTGGCCACTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCGCTGGATGACCGCCTGGCAACCGGGCTGGATGGCCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGACCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGTCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGACAGCGTTGGTGGCGCTGGTGCTTGGCGACGGGGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGGTTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGACCTTACCGTTGTTGCTGGCGCTGATTGCCGTACTGTTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGCTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCCTGGGTCAGCCTGGCCGTGCTGCCATTGGCATTG
CTGGGCACTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCACTGCTCTGGCTGGCGGGAGGTTTGCTCGATGTGCTCTT
CCGGCTGCTGGAGTTGGTGGCGCAACAGCAGTCGGCGTGGCTGCCAGCAGTTCTGCCGTTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTACGTTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGG
GTACCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCAGTGCTTTTGCG
CACCCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTGGGGGTGGGCAGACTGGACCTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGC
GCAATCATGCGTGGCCTGCCGGTCGAACGGGTGATCGGCGGCGAATTGCTGGATGACCTGCAACTGCAACCTTGCGTAAG
TGGCGAGCAGTGGATGTGGGATGGCGTGCGCTTTTCGATGTGGCGCTGGGCCGATGGGCAGAGCAGCAATGACCGCTCCT
GTGTGTTGTTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGACATGGAGGCCGGTGCCGAACGGGCCTGGCTG
GCGGCCACGGAAGCACCGCGGATCGACTGGTTGCAGTCGCCGCATCACGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCAT
CCGCGCCACGGCGCCGCGCGGGGTACTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGG
GAGGTGGAGGGTGTGCGGGGGCAGAGGCGGTTTTGGCGGGTTCGGGTGCAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.444

97.693

0.581
  comA Ralstonia pseudosolanacearum GMI1000

35.422

100

0.376