Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IE322_RS14365 Genome accession   NZ_CP061848
Coordinates   3162623..3163258 (-) Length   211 a.a.
NCBI ID   WP_051099753.1    Uniprot ID   A0A0E9ZJ72
Organism   Pseudomonas asiatica strain C3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3157623..3168258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE322_RS14335 (IE322_14335) murB 3158720..3159739 (-) 1020 WP_015269404.1 UDP-N-acetylmuramate dehydrogenase -
  IE322_RS14340 (IE322_14340) - 3159736..3160200 (-) 465 WP_015269403.1 low molecular weight protein-tyrosine-phosphatase -
  IE322_RS14345 (IE322_14345) kdsB 3160200..3160964 (-) 765 WP_015269402.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IE322_RS14350 (IE322_14350) - 3160961..3161146 (-) 186 WP_011532874.1 Trm112 family protein -
  IE322_RS14355 (IE322_14355) lpxK 3161191..3162192 (-) 1002 WP_015269401.1 tetraacyldisaccharide 4'-kinase -
  IE322_RS14360 (IE322_14360) - 3162192..3162626 (-) 435 WP_013971564.1 biopolymer transporter ExbD -
  IE322_RS14365 (IE322_14365) exbB 3162623..3163258 (-) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IE322_RS14370 (IE322_14370) comA 3163678..3165891 (-) 2214 WP_189121685.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IE322_RS14375 (IE322_14375) - 3166034..3166540 (+) 507 Protein_2850 DUF2062 domain-containing protein -
  IE322_RS14380 (IE322_14380) - 3166550..3167329 (-) 780 WP_015269397.1 ABC transporter permease -
  IE322_RS14385 (IE322_14385) - 3167326..3168258 (-) 933 WP_013971560.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.11 Da        Isoelectric Point: 7.3616

>NTDB_id=485095 IE322_RS14365 WP_051099753.1 3162623..3163258(-) (exbB) [Pseudomonas asiatica strain C3]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=485095 IE322_RS14365 WP_051099753.1 3162623..3163258(-) (exbB) [Pseudomonas asiatica strain C3]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCTGATTCGCCATTGGGCGAAATCCTTGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGTACCCTCGGCACCATCGCCGCCATGGCTCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGTTGGCCGGTGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAGGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E9ZJ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825