Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LMOG_RS13535 | Genome accession | NC_017545 |
| Coordinates | 2706337..2706819 (-) | Length | 160 a.a. |
| NCBI ID | WP_003723952.1 | Uniprot ID | A0A823F2G5 |
| Organism | Listeria monocytogenes J0161 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2682416..2721202 | 2706337..2706819 | within | 0 |
Gene organization within MGE regions
Location: 2682416..2721202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMOG_RS13390 (LMOG_02993) | acrIIA4 | 2682416..2682679 (+) | 264 | WP_003723290.1 | anti-CRISPR protein AcrIIA4 | - |
| LMOG_RS13395 (LMOG_02992) | acrIIA1 | 2682684..2683133 (+) | 450 | WP_003723291.1 | anti-CRISPR protein AcrIIA1 | - |
| LMOG_RS13400 (LMOG_02991) | - | 2683207..2683806 (-) | 600 | WP_003723292.1 | N-acetyltransferase | - |
| LMOG_RS15560 (LMOG_02990) | - | 2683793..2683969 (-) | 177 | WP_003733956.1 | hypothetical protein | - |
| LMOG_RS13405 (LMOG_02989) | - | 2684208..2684915 (-) | 708 | WP_003723293.1 | M15 family metallopeptidase | - |
| LMOG_RS13410 (LMOG_02988) | - | 2684915..2685196 (-) | 282 | WP_003723294.1 | phage holin | - |
| LMOG_RS13415 (LMOG_02987) | - | 2685196..2685501 (-) | 306 | WP_003733957.1 | hypothetical protein | - |
| LMOG_RS13420 (LMOG_02986) | - | 2685552..2687714 (-) | 2163 | WP_003723296.1 | phage tail spike protein | - |
| LMOG_RS13425 (LMOG_02985) | - | 2687727..2689295 (-) | 1569 | WP_003734108.1 | distal tail protein Dit | - |
| LMOG_RS13430 (LMOG_02984) | - | 2689292..2694082 (-) | 4791 | WP_003733958.1 | phage tail tape measure protein | - |
| LMOG_RS15680 (LMOG_02983) | - | 2694087..2694398 (-) | 312 | WP_077904865.1 | Gp15 family bacteriophage protein | - |
| LMOG_RS13440 (LMOG_02982) | - | 2694395..2694826 (-) | 432 | WP_003723780.1 | hypothetical protein | - |
| LMOG_RS13445 | - | 2694875..2695180 (-) | 306 | WP_226319503.1 | Ig-like domain-containing protein | - |
| LMOG_RS13450 | - | 2695137..2695568 (-) | 432 | WP_003723782.1 | phage tail tube protein | - |
| LMOG_RS13455 (LMOG_02979) | - | 2695540..2695944 (-) | 405 | WP_003723783.1 | hypothetical protein | - |
| LMOG_RS13460 (LMOG_02978) | - | 2695941..2696258 (-) | 318 | WP_003723784.1 | HK97 gp10 family phage protein | - |
| LMOG_RS13465 (LMOG_02977) | - | 2696248..2696613 (-) | 366 | WP_003733959.1 | hypothetical protein | - |
| LMOG_RS13470 (LMOG_02976) | - | 2696613..2696966 (-) | 354 | WP_003723785.1 | hypothetical protein | - |
| LMOG_RS15565 (LMOG_02975) | - | 2696967..2697122 (-) | 156 | WP_003723786.1 | hypothetical protein | - |
| LMOG_RS13475 (LMOG_02974) | - | 2697136..2698008 (-) | 873 | WP_003723787.1 | hypothetical protein | - |
| LMOG_RS13480 (LMOG_02973) | - | 2698031..2698585 (-) | 555 | WP_003723788.1 | hypothetical protein | - |
| LMOG_RS13485 (LMOG_02972) | - | 2698681..2699724 (-) | 1044 | WP_003723789.1 | phage minor capsid protein | - |
| LMOG_RS13490 (LMOG_02971) | - | 2699729..2701285 (-) | 1557 | WP_003723790.1 | hypothetical protein | - |
| LMOG_RS13495 (LMOG_02970) | - | 2701300..2702619 (-) | 1320 | WP_003733960.1 | PBSX family phage terminase large subunit | - |
| LMOG_RS13500 (LMOG_02969) | terS | 2702558..2703343 (-) | 786 | WP_003723792.1 | phage terminase small subunit | - |
| LMOG_RS13505 (LMOG_02968) | - | 2703383..2703610 (-) | 228 | WP_003723793.1 | hypothetical protein | - |
| LMOG_RS13510 (LMOG_02967) | - | 2704156..2704758 (-) | 603 | WP_003723794.1 | hypothetical protein | - |
| LMOG_RS13515 (LMOG_02966) | - | 2704785..2705222 (-) | 438 | WP_003723795.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| LMOG_RS15670 | - | 2705244..2705369 (-) | 126 | WP_256094150.1 | hypothetical protein | - |
| LMOG_RS13520 (LMOG_02965) | - | 2705388..2705774 (-) | 387 | WP_003723796.1 | DUF2481 family protein | - |
| LMOG_RS13525 (LMOG_02964) | - | 2705778..2706182 (-) | 405 | WP_003733961.1 | DUF1064 domain-containing protein | - |
| LMOG_RS13530 (LMOG_02963) | - | 2706127..2706318 (-) | 192 | WP_003723797.1 | hypothetical protein | - |
| LMOG_RS13535 (LMOG_02962) | ssbA | 2706337..2706819 (-) | 483 | WP_003723952.1 | single-stranded DNA-binding protein | Machinery gene |
| LMOG_RS13540 (LMOG_02961) | - | 2706816..2707316 (-) | 501 | WP_003723953.1 | hypothetical protein | - |
| LMOG_RS13545 (LMOG_02960) | - | 2707313..2707714 (-) | 402 | WP_003723954.1 | hypothetical protein | - |
| LMOG_RS13550 (LMOG_02959) | - | 2707711..2707971 (-) | 261 | WP_003723955.1 | hypothetical protein | - |
| LMOG_RS13555 (LMOG_02958) | - | 2707971..2708177 (-) | 207 | WP_003723956.1 | hypothetical protein | - |
| LMOG_RS13560 (LMOG_02957) | - | 2708174..2708659 (-) | 486 | WP_003723957.1 | pentapeptide repeat-containing protein | - |
| LMOG_RS13565 (LMOG_02956) | - | 2708656..2708865 (-) | 210 | WP_003723958.1 | hypothetical protein | - |
| LMOG_RS13570 (LMOG_02955) | - | 2708862..2709269 (-) | 408 | WP_003723959.1 | YopX family protein | - |
| LMOG_RS13575 (LMOG_02954) | - | 2709266..2709454 (-) | 189 | WP_003733963.1 | hypothetical protein | - |
| LMOG_RS13580 (LMOG_02953) | - | 2709447..2710049 (-) | 603 | WP_003723960.1 | DUF1642 domain-containing protein | - |
| LMOG_RS13585 (LMOG_02952) | - | 2710046..2710255 (-) | 210 | WP_003723961.1 | hypothetical protein | - |
| LMOG_RS15685 (LMOG_02951) | - | 2710252..2710545 (-) | 294 | WP_003723969.1 | hypothetical protein | - |
| LMOG_RS13595 (LMOG_02950) | - | 2710562..2710759 (-) | 198 | WP_003723963.1 | hypothetical protein | - |
| LMOG_RS13600 (LMOG_02949) | - | 2710763..2711668 (-) | 906 | WP_003723964.1 | DnaD domain-containing protein | - |
| LMOG_RS13605 (LMOG_02948) | - | 2711706..2712617 (-) | 912 | WP_003723965.1 | RecT family recombinase | - |
| LMOG_RS13610 (LMOG_02947) | - | 2712610..2714121 (-) | 1512 | WP_003723967.1 | AAA family ATPase | - |
| LMOG_RS13615 (LMOG_02946) | - | 2714354..2714542 (-) | 189 | WP_003722564.1 | gp45 family putative tail fiber system protein | - |
| LMOG_RS13620 (LMOG_02945) | - | 2714645..2714851 (-) | 207 | WP_003733681.1 | helix-turn-helix transcriptional regulator | - |
| LMOG_RS13625 (LMOG_02944) | - | 2714841..2715371 (-) | 531 | WP_003733682.1 | hypothetical protein | - |
| LMOG_RS13630 (LMOG_02943) | - | 2715495..2716271 (-) | 777 | WP_003733683.1 | phage antirepressor Ant | - |
| LMOG_RS15570 | - | 2716335..2716532 (+) | 198 | WP_003733684.1 | hypothetical protein | - |
| LMOG_RS13640 (LMOG_02940) | - | 2716534..2716815 (-) | 282 | WP_003722567.1 | hypothetical protein | - |
| LMOG_RS13645 (LMOG_02939) | - | 2716841..2717125 (-) | 285 | WP_003733686.1 | hypothetical protein | - |
| LMOG_RS13650 (LMOG_02938) | - | 2717137..2717331 (-) | 195 | WP_003733687.1 | hypothetical protein | - |
| LMOG_RS13655 (LMOG_02937) | - | 2717352..2717561 (-) | 210 | WP_003733688.1 | helix-turn-helix transcriptional regulator | - |
| LMOG_RS13660 (LMOG_02936) | - | 2717727..2718149 (+) | 423 | WP_003724014.1 | helix-turn-helix transcriptional regulator | - |
| LMOG_RS13665 (LMOG_02935) | - | 2718165..2718590 (+) | 426 | WP_003724015.1 | ImmA/IrrE family metallo-endopeptidase | - |
| LMOG_RS13670 (LMOG_02934) | - | 2718605..2719312 (+) | 708 | WP_003724016.1 | hypothetical protein | - |
| LMOG_RS13675 (LMOG_02933) | - | 2719371..2719976 (+) | 606 | WP_003724017.1 | hypothetical protein | - |
| LMOG_RS13680 (LMOG_02932) | - | 2720039..2721202 (+) | 1164 | WP_003724018.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17837.65 Da Isoelectric Point: 4.9909
>NTDB_id=48495 LMOG_RS13535 WP_003723952.1 2706337..2706819(-) (ssbA) [Listeria monocytogenes J0161]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAESVQFLDPKNNNVEGTTSNNYQNKANYSNNNKTSSYRADTGQNSDSFANEGKPIDINEDDLPF
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAESVQFLDPKNNNVEGTTSNNYQNKANYSNNNKTSSYRADTGQNSDSFANEGKPIDINEDDLPF
Nucleotide
Download Length: 483 bp
>NTDB_id=48495 LMOG_RS13535 WP_003723952.1 2706337..2706819(-) (ssbA) [Listeria monocytogenes J0161]
ATGATGAACCGTGTAGTACTTGTAGGACGATTAACAAAAGACCCTGAATTACGTTACACTCCAGCAGGCGTGGCTGTTGC
GACTTTTACTTTAGCTGTAAATCGTACGTTCACTAACCAACAGGGAGAGCGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTTAAGAAGGGAAGCATGGCAGGTGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGATAGCGACGGTAAACGCGTTTTCGTTACAGAAGTAGTTGCTGAATCAGTTCAATTCTTAGACCCTAAAAA
TAACAACGTAGAAGGCACTACATCGAATAATTATCAAAACAAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATA
GAGCGGATACGGGCCAGAATAGTGATTCATTTGCGAATGAAGGTAAGCCGATTGATATTAACGAAGACGATTTGCCGTTT
TGA
ATGATGAACCGTGTAGTACTTGTAGGACGATTAACAAAAGACCCTGAATTACGTTACACTCCAGCAGGCGTGGCTGTTGC
GACTTTTACTTTAGCTGTAAATCGTACGTTCACTAACCAACAGGGAGAGCGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTTAAGAAGGGAAGCATGGCAGGTGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGATAGCGACGGTAAACGCGTTTTCGTTACAGAAGTAGTTGCTGAATCAGTTCAATTCTTAGACCCTAAAAA
TAACAACGTAGAAGGCACTACATCGAATAATTATCAAAACAAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATA
GAGCGGATACGGGCCAGAATAGTGATTCATTTGCGAATGAAGGTAAGCCGATTGATATTAACGAAGACGATTTGCCGTTT
TGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.698 |
100 |
0.706 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.562 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
63.208 |
66.25 |
0.419 |