Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | J9247_RS24685 | Genome accession | NZ_CP072783 |
| Coordinates | 5300655..5301527 (+) | Length | 290 a.a. |
| NCBI ID | WP_033976386.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain LICME WGH-6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5295655..5306527
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9247_RS24660 (J9247_24660) | nadC | 5296003..5296851 (+) | 849 | WP_033970464.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| J9247_RS24670 (J9247_24670) | pilA | 5297040..5297495 (-) | 456 | WP_057389195.1 | pilin | Machinery gene |
| J9247_RS24675 (J9247_24675) | pilB | 5297727..5299427 (+) | 1701 | WP_033976388.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| J9247_RS24680 (J9247_24680) | pilC | 5299431..5300651 (+) | 1221 | WP_033976387.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| J9247_RS24685 (J9247_24685) | pilD | 5300655..5301527 (+) | 873 | WP_033976386.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| J9247_RS24690 (J9247_24690) | coaE | 5301524..5302135 (+) | 612 | WP_033970460.1 | dephospho-CoA kinase | - |
| J9247_RS24695 (J9247_24695) | yacG | 5302132..5302332 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| J9247_RS24700 (J9247_24700) | - | 5302369..5302578 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| J9247_RS24705 (J9247_24705) | - | 5302684..5303373 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| J9247_RS24710 (J9247_24710) | - | 5303370..5303840 (-) | 471 | WP_033970459.1 | hypothetical protein | - |
| J9247_RS24715 (J9247_24715) | - | 5303837..5304262 (-) | 426 | WP_033970457.1 | GNAT family N-acetyltransferase | - |
| J9247_RS24720 (J9247_24720) | - | 5304395..5305024 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| J9247_RS24725 (J9247_24725) | - | 5305021..5305470 (+) | 450 | WP_033970456.1 | MOSC domain-containing protein | - |
| J9247_RS24730 (J9247_24730) | - | 5305496..5305666 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31825.86 Da Isoelectric Point: 7.7068
>NTDB_id=484931 J9247_RS24685 WP_033976386.1 5300655..5301527(+) (pilD) [Pseudomonas aeruginosa strain LICME WGH-6]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=484931 J9247_RS24685 WP_033976386.1 5300655..5301527(+) (pilD) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAACCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAACCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |