Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AVCA6_RS20625 Genome accession   NC_021150
Coordinates   4594057..4594677 (-) Length   206 a.a.
NCBI ID   WP_012703009.1    Uniprot ID   C1DHQ9
Organism   Azotobacter vinelandii CA6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4589057..4599677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVCA6_RS20605 (AvCA6_45240) aroB 4589705..4590808 (-) 1104 WP_012703005.1 3-dehydroquinate synthase -
  AVCA6_RS20610 (AvCA6_45250) aroK 4590860..4591378 (-) 519 WP_012703006.1 shikimate kinase AroK -
  AVCA6_RS20615 (AvCA6_45260) pilQ 4591383..4593482 (-) 2100 WP_175555950.1 type IV pilus secretin PilQ Machinery gene
  AVCA6_RS20620 (AvCA6_45270) - 4593536..4594060 (-) 525 WP_012703008.1 pilus assembly protein PilP -
  AVCA6_RS20625 (AvCA6_45280) pilO 4594057..4594677 (-) 621 WP_012703009.1 type 4a pilus biogenesis protein PilO Machinery gene
  AVCA6_RS20630 (AvCA6_45290) - 4594674..4595333 (-) 660 WP_012703010.1 PilN domain-containing protein -
  AVCA6_RS20635 (AvCA6_45300) pilM 4595334..4596398 (-) 1065 WP_041807416.1 pilus assembly protein PilM Machinery gene
  AVCA6_RS20640 (AvCA6_45310) - 4596580..4599039 (+) 2460 WP_012703012.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22929.44 Da        Isoelectric Point: 5.0972

>NTDB_id=48465 AVCA6_RS20625 WP_012703009.1 4594057..4594677(-) (pilO) [Azotobacter vinelandii CA6]
MSLSGSLESLRKIDLADLDLDNLGSWPAPLRTATCLLMLIVVLALGYNFHLKDLQAQLERERGEEGALKQQFSTKAFQAA
NLEAYRQQMAEMEASFGALLRQLPSDTEVPALLDDITRTGLGSGLEFEEIKLLDEVVRQFYIELPIQISVMGAYHDLATF
VSGAASLPRIVTLHDFEIKPVASGNTKLRMKILAKTYRYNDKGPQK

Nucleotide


Download         Length: 621 bp        

>NTDB_id=48465 AVCA6_RS20625 WP_012703009.1 4594057..4594677(-) (pilO) [Azotobacter vinelandii CA6]
ATGAGCCTGTCCGGGTCCCTGGAGAGTCTGCGCAAGATCGATCTGGCCGATCTGGATCTGGACAACCTCGGCTCGTGGCC
GGCTCCGCTGAGGACCGCCACCTGCCTGCTGATGCTGATCGTTGTTCTGGCGCTGGGCTACAACTTCCATCTCAAGGATC
TGCAGGCGCAGCTCGAGCGGGAGCGGGGCGAAGAGGGGGCCTTGAAGCAGCAGTTCTCCACCAAGGCTTTCCAGGCCGCG
AACCTGGAAGCCTACAGGCAGCAGATGGCGGAAATGGAGGCCTCTTTCGGCGCCTTGTTGCGGCAATTGCCGAGCGATAC
CGAGGTGCCCGCTCTGCTCGATGACATCACCCGTACCGGACTGGGCAGCGGCCTGGAGTTCGAGGAAATCAAACTTCTCG
ACGAAGTTGTCCGGCAGTTCTATATCGAATTGCCGATCCAAATATCCGTAATGGGTGCTTATCACGATCTGGCTACTTTC
GTAAGTGGCGCCGCCAGTCTTCCACGCATCGTCACATTGCATGATTTCGAAATAAAACCAGTGGCTTCGGGAAATACGAA
GTTGCGCATGAAGATATTGGCCAAGACCTATCGCTATAACGACAAGGGACCGCAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DHQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

45.078

93.689

0.422
  pilO Acinetobacter baumannii D1279779

40.642

90.777

0.369
  comO/pilO Acinetobacter baylyi ADP1

40.86

90.291

0.369

Multiple sequence alignment