Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   J8G07_RS16940 Genome accession   NZ_CP072612
Coordinates   3464087..3465223 (-) Length   378 a.a.
NCBI ID   WP_087920760.1    Uniprot ID   A7Z3N2
Organism   Bacillus amyloliquefaciens strain G10     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3459087..3470223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS16905 - 3459333..3460160 (-) 828 WP_032874571.1 phage portal protein -
  J8G07_RS19580 - 3460150..3460329 (-) 180 WP_029325864.1 hypothetical protein -
  J8G07_RS16910 xre 3460520..3460858 (+) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  J8G07_RS16915 - 3461007..3461597 (+) 591 WP_007610775.1 ImmA/IrrE family metallo-endopeptidase -
  J8G07_RS16920 - 3461737..3462342 (-) 606 WP_032874569.1 poly-gamma-glutamate hydrolase family protein -
  J8G07_RS16925 - 3462452..3462829 (+) 378 WP_007610770.1 PH domain-containing protein -
  J8G07_RS16930 - 3462867..3463820 (-) 954 WP_032874566.1 N-acetylmuramoyl-L-alanine amidase -
  J8G07_RS16935 - 3463963..3464097 (-) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  J8G07_RS16940 rapC 3464087..3465223 (-) 1137 WP_087920760.1 Rap family tetratricopeptide repeat protein Regulator
  J8G07_RS16945 - 3465428..3465895 (+) 468 WP_021494037.1 DinB family protein -
  J8G07_RS16950 - 3466041..3466805 (+) 765 WP_007610763.1 sulfite exporter TauE/SafE family protein -
  J8G07_RS16955 - 3466851..3469736 (-) 2886 WP_032874564.1 type 2 lanthipeptide synthetase LanM family protein -
  J8G07_RS16960 - 3469825..3470001 (-) 177 WP_017417596.1 class II lanthipeptide, LchA2/BrtA2 family -
  J8G07_RS16965 - 3470037..3470213 (-) 177 WP_162859400.1 class II lanthipeptide, LchA2/BrtA2 family -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45073.28 Da        Isoelectric Point: 4.9159

>NTDB_id=484431 J8G07_RS16940 WP_087920760.1 3464087..3465223(-) (rapC) [Bacillus amyloliquefaciens strain G10]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=484431 J8G07_RS16940 WP_087920760.1 3464087..3465223(-) (rapC) [Bacillus amyloliquefaciens strain G10]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATATTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATTAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCAGAAGCAGAGAAGCAATACCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTGAATCTGTTCCAATTTTTACATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z3N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426