Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IDM46_RS10780 Genome accession   NZ_CP061714
Coordinates   2303855..2305009 (+) Length   384 a.a.
NCBI ID   WP_223878074.1    Uniprot ID   -
Organism   Luteimonas sp. MC1825     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2298855..2310009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM46_RS10765 (IDM46_10765) - 2299761..2300864 (-) 1104 WP_185115697.1 UDP-N-acetylglucosamine 2-epimerase -
  IDM46_RS10770 (IDM46_10770) - 2300857..2301708 (-) 852 WP_185115698.1 glycosyltransferase family 2 protein -
  IDM46_RS10775 (IDM46_10775) pilB 2301840..2303564 (+) 1725 WP_185115699.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IDM46_RS10780 (IDM46_10780) pilC 2303855..2305009 (+) 1155 WP_223878074.1 type II secretion system F family protein Machinery gene
  IDM46_RS10785 (IDM46_10785) - 2305014..2305874 (+) 861 WP_185115701.1 A24 family peptidase -
  IDM46_RS10790 (IDM46_10790) coaE 2305876..2306493 (+) 618 WP_185115702.1 dephospho-CoA kinase -
  IDM46_RS10795 (IDM46_10795) - 2306499..2306765 (+) 267 WP_185115703.1 hypothetical protein -
  IDM46_RS10800 (IDM46_10800) - 2306777..2307247 (-) 471 WP_185115704.1 hypothetical protein -
  IDM46_RS10805 (IDM46_10805) - 2307244..2308776 (-) 1533 WP_185115705.1 DUF2235 domain-containing protein -
  IDM46_RS10810 (IDM46_10810) - 2308807..2309400 (-) 594 WP_185115706.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41937.47 Da        Isoelectric Point: 9.3193

>NTDB_id=484349 IDM46_RS10780 WP_223878074.1 2303855..2305009(+) (pilC) [Luteimonas sp. MC1825]
MKGEQSAKNANLLRAELRRQGITPTVVKAKSKPLFGSTGQKITAKDIAVFSRQLATMIKSGVPVVQAMEIIGNGHKNERM
RVMVNSVRLDIEGGSSIYESMSKHPVQFDELYRNLVRAGESAGVLETVLDTIATYKENTESLKGKIKKALFYPATVIAVA
ILVSAILLVFVVPQFQQVFQSFGADLPAFTMMIIAASDFMIAWWWAILALIVGGGFLFMYLYKRSPAMQHTADRLMLKIP
VVGQILHNASIARFARTLATTFKAGVPLVEALDIVAGATGNQVYEKAVHEIKDDVSVGFQLNMAMKQVNLFPHMVVQMTA
IGEEAGALDTMLFKVAEFYEEEVNNAVDALSSLLEPMIMIIIGGVVGSMVIGMYLPIFKLAAAI

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=484349 IDM46_RS10780 WP_223878074.1 2303855..2305009(+) (pilC) [Luteimonas sp. MC1825]
ATGAAGGGCGAGCAGTCGGCAAAGAACGCCAACCTGCTGCGCGCAGAGTTGCGTCGCCAGGGCATCACCCCCACCGTGGT
CAAGGCGAAGTCCAAGCCACTGTTCGGCAGCACCGGCCAGAAGATTACGGCCAAGGACATTGCGGTGTTCAGCCGACAGC
TGGCCACGATGATCAAGTCAGGCGTGCCCGTGGTGCAGGCGATGGAGATCATCGGCAACGGCCACAAGAACGAGCGCATG
AGGGTCATGGTGAACAGCGTGCGCCTGGACATCGAGGGCGGCTCGTCGATCTACGAATCGATGAGCAAGCACCCTGTGCA
GTTCGACGAGCTTTACCGCAACTTGGTCAGGGCGGGCGAAAGCGCCGGCGTGCTGGAAACGGTGCTCGACACGATTGCCA
CATATAAAGAGAACACCGAAAGCCTCAAGGGCAAGATCAAGAAGGCGCTGTTCTATCCCGCCACGGTCATCGCCGTTGCG
ATCCTGGTCAGTGCAATCCTGCTGGTGTTTGTGGTGCCGCAGTTTCAGCAAGTGTTCCAGAGCTTCGGGGCTGACTTGCC
CGCGTTCACCATGATGATCATTGCAGCCAGTGACTTCATGATTGCCTGGTGGTGGGCCATCCTTGCATTGATCGTTGGTG
GAGGATTTCTCTTCATGTATCTCTACAAGAGATCGCCCGCCATGCAGCACACCGCGGACAGGCTGATGCTTAAGATCCCG
GTCGTGGGTCAGATCCTGCACAACGCATCGATTGCCCGTTTCGCGCGCACCTTGGCCACCACGTTCAAGGCGGGCGTACC
GCTGGTGGAGGCGCTGGACATCGTCGCCGGCGCTACCGGAAACCAGGTCTACGAGAAGGCCGTGCACGAAATCAAGGATG
ACGTGTCCGTGGGCTTCCAGCTCAACATGGCCATGAAACAGGTCAACCTGTTCCCGCACATGGTGGTGCAGATGACAGCC
ATTGGCGAAGAAGCCGGCGCCCTCGACACCATGCTGTTCAAGGTGGCGGAGTTCTACGAGGAAGAGGTCAACAACGCCGT
GGACGCGCTCAGCAGCCTGCTGGAGCCGATGATCATGATCATCATCGGCGGCGTGGTGGGCTCGATGGTGATCGGCATGT
ACCTGCCGATCTTCAAGCTGGCGGCGGCTATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(254-376)

Type II secretion system (T2SS), protein F (T2SSF)

(50-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.469

100

0.555
  pilC Legionella pneumophila strain ERS1305867

54.948

100

0.549
  pilC Acinetobacter baylyi ADP1

51.295

100

0.516
  pilC Acinetobacter baumannii D1279779

50.909

100

0.51
  pilG Neisseria gonorrhoeae MS11

45.195

100

0.453
  pilG Neisseria meningitidis 44/76-A

45.195

100

0.453
  pilC Vibrio cholerae strain A1552

40.107

97.396

0.391
  pilC Vibrio campbellii strain DS40M4

39.628

97.917

0.388
  pilC Thermus thermophilus HB27

44.214

87.76

0.388