Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IDM46_RS10680 Genome accession   NZ_CP061714
Coordinates   2283741..2285141 (+) Length   466 a.a.
NCBI ID   WP_185116081.1    Uniprot ID   A0A7X0QQL5
Organism   Luteimonas sp. MC1825     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2278741..2290141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM46_RS10655 (IDM46_10655) - 2279002..2279316 (-) 315 WP_185115678.1 CcdB family protein -
  IDM46_RS10660 (IDM46_10660) - 2279313..2279579 (-) 267 WP_185115679.1 type II toxin-antitoxin system CcdA family antitoxin -
  IDM46_RS10665 (IDM46_10665) sucD 2279816..2280694 (-) 879 WP_185115680.1 succinate--CoA ligase subunit alpha -
  IDM46_RS10670 (IDM46_10670) sucC 2280745..2281911 (-) 1167 WP_185115681.1 ADP-forming succinate--CoA ligase subunit beta -
  IDM46_RS10675 (IDM46_10675) - 2282084..2283664 (+) 1581 WP_185116080.1 ATP-binding protein -
  IDM46_RS10680 (IDM46_10680) pilR 2283741..2285141 (+) 1401 WP_185116081.1 sigma-54 dependent transcriptional regulator Regulator
  IDM46_RS10685 (IDM46_10685) - 2285171..2285902 (-) 732 WP_185115682.1 methyltransferase domain-containing protein -
  IDM46_RS10690 (IDM46_10690) - 2285899..2286558 (-) 660 WP_185115683.1 class I SAM-dependent methyltransferase -
  IDM46_RS10695 (IDM46_10695) - 2286555..2286902 (-) 348 WP_185115684.1 DUF2304 domain-containing protein -
  IDM46_RS10700 (IDM46_10700) - 2286899..2287639 (-) 741 WP_221441878.1 glycosyltransferase family 2 protein -
  IDM46_RS10705 (IDM46_10705) - 2287650..2288459 (-) 810 WP_185115685.1 glycosyltransferase family A protein -
  IDM46_RS10710 (IDM46_10710) - 2288459..2288842 (-) 384 WP_185115686.1 hypothetical protein -
  IDM46_RS10715 (IDM46_10715) pilA2 2289373..2289807 (+) 435 WP_185115687.1 pilin Machinery gene

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 49611.77 Da        Isoelectric Point: 6.8384

>NTDB_id=484346 IDM46_RS10680 WP_185116081.1 2283741..2285141(+) (pilR) [Luteimonas sp. MC1825]
MSEARSALIVDDEHDIRELLVLTLGRMGLRTDTAANLAVAREMLAVASYDLCLTDMRLPDGSGLELVSDISTRFPNTPVA
VITAYGNVEAAVEALKAGAFDFVNKPVDINVLRGLVRQALELNTKRTTRPEEASRLLGTSPAMVGLRDTIAKVSRSQAPV
HISGESGTGKELVARTIHAQGARAGGPFVPVNCGAIPTELMESEFFGHKKGSFTGAHADKPGLFQTADGGTLFLDEVAEL
PLSMQVKLLRAIQEKKIRPVGASTEIDVDVRILSATHKDLNALVNAGSFRHDLYYRINVIELHVPALRERDGDLPLLSNA
IFARLAQAMHRPAPVLGADALAALAGYAFPGNVRELENVLERAMALADSDHITAADLRLPTGGAGGFASQGRGAPVAAPP
QVGASPGSLNPRETASSALPSYIEEIERAAIQQALTESRYNKTKAAAALGITFRALRYKLKKLGIE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=484346 IDM46_RS10680 WP_185116081.1 2283741..2285141(+) (pilR) [Luteimonas sp. MC1825]
ATGAGTGAAGCCCGCAGCGCCCTCATCGTCGATGACGAGCACGACATCCGCGAGCTGCTGGTGCTCACCCTGGGCCGCAT
GGGCCTGCGCACCGACACCGCCGCCAACCTGGCGGTCGCCCGCGAGATGCTGGCCGTCGCCAGCTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCCTTGAGCTGGTGAGCGACATCTCCACGCGCTTCCCCAATACGCCAGTGGCG
GTGATCACCGCCTACGGCAACGTCGAAGCCGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAACAAGCCGGT
GGACATCAACGTGCTGCGCGGCCTGGTGCGCCAGGCGCTGGAGCTCAACACCAAGCGCACCACGCGCCCGGAGGAAGCCA
GCCGCCTGCTCGGCACCTCGCCGGCCATGGTCGGCCTGCGCGACACCATCGCCAAGGTCTCGCGCAGCCAGGCGCCGGTG
CACATCAGCGGCGAGTCCGGCACCGGCAAGGAACTGGTGGCGCGCACCATCCACGCACAGGGCGCGCGCGCCGGCGGGCC
GTTCGTGCCGGTCAACTGCGGCGCGATTCCCACGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCA
CCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGACGGCCGACGGCGGCACCCTGTTCCTGGACGAAGTGGCGGAGCTG
CCGCTGTCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGAAGATCCGCCCTGTGGGGGCGAGCACCGAGATCGA
TGTCGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTCAATGCACTGGTGAATGCCGGCAGCTTCCGGCATGACCTGT
ACTACCGGATCAACGTGATCGAGCTGCACGTGCCCGCGCTGCGCGAGCGCGATGGCGACCTGCCGCTGCTGTCGAATGCG
ATCTTCGCGCGGCTGGCGCAGGCGATGCACCGGCCTGCGCCGGTGCTGGGTGCGGATGCGCTGGCGGCGCTGGCTGGGTA
CGCGTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTGGAACGCGCCATGGCCCTGGCGGACAGCGACCACATCACCG
CGGCGGATCTGCGATTGCCGACGGGTGGGGCTGGCGGGTTTGCCTCGCAGGGCCGCGGCGCGCCCGTGGCGGCACCGCCG
CAGGTCGGCGCTTCGCCTGGTTCGCTCAATCCGCGCGAGACCGCGTCAAGCGCCCTTCCCTCGTACATCGAAGAGATCGA
GCGGGCGGCGATCCAGCAGGCGCTGACCGAGAGCCGCTACAACAAGACCAAGGCGGCGGCGGCGCTGGGGATCACGTTCC
GGGCGCTGCGGTACAAGCTCAAGAAGCTCGGCATCGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X0QQL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.075

99.785

0.609
  pilR Acinetobacter baumannii strain A118

50.32

100

0.506