Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AVCA6_RS09205 Genome accession   NC_021150
Coordinates   1997659..1999668 (+) Length   669 a.a.
NCBI ID   WP_012700625.1    Uniprot ID   C1DEN1
Organism   Azotobacter vinelandii CA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1992659..2004668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVCA6_RS09180 (AvCA6_20050) rlmM 1993965..1995026 (+) 1062 WP_012700621.1 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM -
  AVCA6_RS09185 (AvCA6_20060) tusA 1995079..1995336 (+) 258 WP_012700622.1 sulfurtransferase TusA -
  AVCA6_RS09190 (AvCA6_20070) comE1/comEA 1995508..1995840 (+) 333 WP_012700623.1 ComEA family DNA-binding protein Machinery gene
  AVCA6_RS09200 (AvCA6_20090) - 1996165..1997361 (-) 1197 WP_012700624.1 amino acid aminotransferase -
  AVCA6_RS09205 (AvCA6_20100) uvrB 1997659..1999668 (+) 2010 WP_012700625.1 excinuclease ABC subunit UvrB Machinery gene
  AVCA6_RS09210 (AvCA6_20110) gltX 1999755..2001236 (+) 1482 WP_012700626.1 glutamate--tRNA ligase -
  AVCA6_RS09215 (AvCA6_20120) - 2001555..2002679 (+) 1125 WP_175555919.1 mechanosensitive ion channel family protein -
  AVCA6_RS09220 (AvCA6_20130) - 2002742..2003605 (-) 864 WP_012700628.1 isocitrate lyase/PEP mutase family protein -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 76038.52 Da        Isoelectric Point: 5.2191

>NTDB_id=48434 AVCA6_RS09205 WP_012700625.1 1997659..1999668(+) (uvrB) [Azotobacter vinelandii CA6]
MSEFQLVTRFQPAGDQPDAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIARVQRPTLVLAPNKTLAAQLYGEFKSFF
PHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRLSATKALMERPDAIIVATVSSIYGLGDPASYLKMVLHI
DRGDRLDQRALLRRLADLQYTRNDLDFARATFRVRGDVIDVFPAESELEAIRIELFDDEVESLAAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVEQIKAELKERLEHLRERGKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGLP
PPTLYDYLPDNALMVIDESHVTVPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPMRFDEWERIAPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPELEVRPALTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADSITGSMR
RAIDETERRRAKQIAFNETHGIVPRGVKKDIQDILEGAVVPGARGRKRVARAAEESGQYAAELRSPSEIDKRIRQLEEKM
YALARDLEFEAAARLRDEIQALRERRLQV

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=48434 AVCA6_RS09205 WP_012700625.1 1997659..1999668(+) (uvrB) [Azotobacter vinelandii CA6]
ATGTCCGAATTTCAGCTGGTGACCCGTTTCCAGCCCGCCGGCGACCAGCCCGATGCCATCCGCCAGATGGTCGAGGGGCT
GGAGGCCGGCCTGTCGCACCAGACCCTGCTCGGGGTGACCGGCTCCGGCAAGACCTTCAGCATCGCCAACGTGATCGCCA
GGGTACAGCGTCCGACCCTGGTGCTGGCGCCCAACAAGACCCTGGCGGCGCAGCTCTACGGCGAGTTCAAGAGCTTCTTT
CCGCACAACGCGGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAAGCCTATGTGCCGTCCTCCGACACCTA
CATCGAGAAGGACGCCTCGATCAACGACCACATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGATGGAGCGGCCGG
ACGCGATCATCGTCGCCACCGTCTCGTCGATCTACGGCCTGGGCGATCCGGCCAGCTACCTGAAGATGGTGCTGCACATC
GACCGCGGCGACCGACTCGACCAGCGCGCCCTGCTGCGCCGCCTGGCCGACCTGCAGTACACCCGCAACGACCTGGACTT
CGCCCGCGCCACCTTCCGCGTGCGTGGCGACGTGATCGACGTCTTCCCCGCCGAATCCGAGCTGGAGGCGATCCGCATCG
AGCTGTTCGACGACGAGGTGGAGAGTCTGGCCGCCTTCGATCCCTTGACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTCACCCCGCGCGAGACGCTGCTGGAAGCGGTGGAGCAGATCAAGGCCGAACTCAA
GGAGCGCCTGGAGCACCTGCGCGAGCGCGGCAAGCTGGTGGAGGCGCAGCGCCTGGAACAGCGCACCCGCTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCCCGCTACCTCTCCGGCCGTGCGCCGGGGCTGCCG
CCGCCGACCCTCTACGACTACCTGCCGGACAACGCGCTGATGGTGATCGACGAATCCCACGTCACCGTCCCGCAGGTCGG
CGCCATGTACAAGGGCGACCGTTCGCGCAAGGAGACCCTGGTGGAATACGGCTTCCGCCTGCCGTCGGCGCTGGACAACC
GGCCGATGCGCTTCGACGAATGGGAGCGCATCGCCCCGCAGACCATCTTCGTCTCGGCGACCCCCGGCCCCTACGAAGCC
GAGCACGCCGGACGGGTGATCGAACAGGTGGTGCGCCCCACCGGGCTGGTCGACCCCGAGCTGGAGGTGCGCCCGGCGCT
GACCCAGGTGGACGACCTGCTGTCGGAGATCCGCAAGCGCGTCGCCGTCGAGGAGCGCGTGCTGGTCACCACCCTGACCA
AGCGCATGGCCGAGGACCTCACCGATTACCTCGGCGACCACGACGTGCGGGTGCGCTACCTGCACTCGGACATCGACACC
GTGGAGCGCGTGGAGATCATCCGCGACCTGCGCAGCGGCGCCTTCGACGTGCTGGTGGGCATCAATCTGCTGCGCGAGGG
GCTGGATATGCCCGAAGTATCGCTGGTGACGATTCTCGACGCGGACAAGGAAGGTTTCCTGCGCAGCGAACGCTCGCTGA
TCCAGACCATCGGCCGCGCCGCGCGCAACCTCAACGGCAAGGCGATTCTCTACGCCGACAGCATCACCGGTTCGATGCGG
CGCGCCATCGACGAGACCGAGCGGCGCCGGGCCAAGCAGATCGCCTTCAACGAAACCCACGGCATCGTGCCCAGGGGCGT
CAAGAAGGACATCCAGGACATCCTCGAAGGCGCCGTGGTGCCCGGTGCGCGCGGTCGCAAGCGGGTGGCCAGGGCGGCGG
AGGAGAGCGGCCAGTACGCCGCCGAGCTGCGCTCGCCGAGCGAGATCGACAAGCGCATCCGTCAGCTCGAGGAGAAGATG
TACGCCTTGGCCCGCGATCTGGAGTTCGAGGCCGCGGCGCGGCTGCGCGACGAGATCCAGGCGCTGCGCGAGCGGCGGCT
GCAGGTCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(433-542)

Type III restriction enzyme, res subunit (ResIII)

(12-96)

UvrB/uvrC motif (UVR)

(630-664)

Ultra-violet resistance protein B (UvrB)

(550-591)

UvrB interaction domain (UvrB_inter)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DEN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.325

99.253

0.559
  uvrB Streptococcus pneumoniae R6

56.325

99.253

0.559
  uvrB Streptococcus pneumoniae D39

56.325

99.253

0.559

Multiple sequence alignment