Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ID168_RS11525 Genome accession   NZ_CP061704
Coordinates   2417298..2417633 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y4_39     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2412298..2422633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS11505 (ID168_11505) gcvT 2412908..2414008 (-) 1101 WP_094247736.1 glycine cleavage system aminomethyltransferase GcvT -
  ID168_RS11510 (ID168_11510) - 2414432..2416102 (+) 1671 WP_069013074.1 DEAD/DEAH box helicase -
  ID168_RS11515 (ID168_11515) - 2416120..2416914 (+) 795 WP_014305407.1 YqhG family protein -
  ID168_RS11520 (ID168_11520) sinI 2417091..2417264 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ID168_RS11525 (ID168_11525) sinR 2417298..2417633 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ID168_RS11530 (ID168_11530) tasA 2417681..2418466 (-) 786 WP_094247735.1 biofilm matrix protein TasA -
  ID168_RS11535 (ID168_11535) sipW 2418530..2419114 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ID168_RS11540 (ID168_11540) tapA 2419086..2419757 (-) 672 WP_070082109.1 amyloid fiber anchoring/assembly protein TapA -
  ID168_RS11545 (ID168_11545) - 2420016..2420345 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ID168_RS11550 (ID168_11550) - 2420385..2420564 (-) 180 WP_003153093.1 YqzE family protein -
  ID168_RS11555 (ID168_11555) comGG 2420621..2420998 (-) 378 WP_094247734.1 competence type IV pilus minor pilin ComGG Machinery gene
  ID168_RS11560 (ID168_11560) comGF 2420999..2421394 (-) 396 WP_094247733.1 competence type IV pilus minor pilin ComGF -
  ID168_RS11565 (ID168_11565) comGE 2421408..2421722 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ID168_RS11570 (ID168_11570) comGD 2421706..2422143 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  ID168_RS11575 (ID168_11575) comGC 2422133..2422441 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=484297 ID168_RS11525 WP_003153104.1 2417298..2417633(+) (sinR) [Bacillus velezensis strain Y4_39]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=484297 ID168_RS11525 WP_003153104.1 2417298..2417633(+) (sinR) [Bacillus velezensis strain Y4_39]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991