Detailed information NTG0484200

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LYSZa7_RS06785
• Genome accession: NZ_CP061699
• Coordinates: 1473973..1474845 (-)
• Length: 290 a.a.
• NCBI ID: WP_200200315.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain LYSZa7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1468973..1479845

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYSZa7_RS06740 (LYSZa7_06740)	-	1469834..1470004 (-)	171	WP_003094672.1	DUF3094 family protein	-
LYSZa7_RS06745 (LYSZa7_06745)	-	1470030..1470479 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
LYSZa7_RS06750 (LYSZa7_06750)	-	1470476..1471105 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
LYSZa7_RS06755 (LYSZa7_06755)	-	1471238..1471663 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
LYSZa7_RS06760 (LYSZa7_06760)	-	1471660..1472130 (+)	471	WP_003094664.1	hypothetical protein	-
LYSZa7_RS06765 (LYSZa7_06765)	-	1472127..1472816 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
LYSZa7_RS06770 (LYSZa7_06770)	-	1472922..1473131 (+)	210	WP_003094660.1	hypothetical protein	-
LYSZa7_RS06775 (LYSZa7_06775)	yacG	1473168..1473368 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
LYSZa7_RS06780 (LYSZa7_06780)	coaE	1473365..1473976 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
LYSZa7_RS06785 (LYSZa7_06785)	pilD	1473973..1474845 (-)	873	WP_200200315.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
LYSZa7_RS06790 (LYSZa7_06790)	pilC	1474846..1476063 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
LYSZa7_RS06795 (LYSZa7_06795)	pilB	1476067..1477767 (-)	1701	WP_200200316.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LYSZa7_RS06800 (LYSZa7_06800)	-	1477998..1478462 (+)	465	WP_124089607.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31871.93 Da
• Isoelectric Point: 7.7068

>NTDB_id=484200 LYSZa7_RS06785 WP_200200315.1 1473973..1474845(-) (pilD) [Pseudomonas aeruginosa strain LYSZa7]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNVESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=484200 LYSZa7_RS06785 WP_200200315.1 1473973..1474845(-) (pilD) [Pseudomonas aeruginosa strain LYSZa7]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGTGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGTATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAATGTCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476