Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   IC764_RS01555 Genome accession   NZ_CP061683
Coordinates   327666..328406 (+) Length   246 a.a.
NCBI ID   WP_077168923.1    Uniprot ID   A0A7H2VHI1
Organism   Acinetobacter seifertii strain AS5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 322666..333406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC764_RS01540 (IC764_01540) ponA 323250..325805 (-) 2556 WP_134262504.1 penicillin-binding protein PBP1a -
  IC764_RS01545 (IC764_01545) pilM 325967..327025 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC764_RS01550 (IC764_01550) pilN 327025..327669 (+) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  IC764_RS01555 (IC764_01555) pilO 327666..328406 (+) 741 WP_077168923.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC764_RS01560 (IC764_01560) pilP 328417..328944 (+) 528 WP_077168924.1 pilus assembly protein PilP Machinery gene
  IC764_RS01565 (IC764_01565) pilQ 329006..331132 (+) 2127 WP_151792203.1 type IV pilus secretin PilQ family protein Machinery gene
  IC764_RS01570 (IC764_01570) aroK 331144..331713 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC764_RS01575 (IC764_01575) aroB 331742..332823 (+) 1082 Protein_304 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27889.51 Da        Isoelectric Point: 4.8393

>NTDB_id=484151 IC764_RS01555 WP_077168923.1 327666..328406(+) (pilO) [Acinetobacter seifertii strain AS5]
MSQDELQELSLEQTSSKNKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFVAIQPKLHAIDNAQAQE
SNLLNEFREKDSKLRNLRQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEVFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPTKDSKSDIPVLNYSIKAKTYRYVEATDTAEQSTQAPTPPASTS
TTAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=484151 IC764_RS01555 WP_077168923.1 327666..328406(+) (pilO) [Acinetobacter seifertii strain AS5]
ATGAGTCAAGATGAACTTCAAGAATTATCATTAGAGCAAACATCTTCAAAGAACAAGAAATTTAATCTCGATAAATTCCT
TCAACAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCCATATCTGTAAAAATTACTTGTTGGATTTTTATTT
TCTTTGCTGTATTAGCTTTAGGTTATTTTGTTGCTATTCAGCCAAAGCTACACGCAATTGATAATGCTCAAGCTCAGGAA
AGTAACTTGTTAAACGAATTTCGAGAAAAAGATTCGAAATTACGTAACTTGCGGCAGTATCAAGTTCAACTTCAAGAGAT
GCAAGCAAATTTTAATCAGCAATTAGAGCAGTTGCCTAAAGAAACAGAGATTCCTAGTTTGGTTGAGGATATTAACTTAA
CTGGTGTGAACTCAGGATTGAAATTTAAAAATATTCGCTTGGAAAATGAAGTCAAACAGGAAGTCTTTATTGAACAACCG
ATTGCGATAGAAGCCACAGGTGATTATCACGCCTTTGGAGCTTTTGTGAGTAGTATTGCTGCGTTGCCGCGTATCGTAAC
CATGCATGACTTTACTGTTGATGTATCTCCAACTAAAGACAGCAAGTCTGATATTCCTGTATTGAATTATTCTATTAAAG
CGAAAACCTATCGCTATGTAGAAGCAACAGATACAGCGGAGCAATCGACCCAAGCTCCAACACCACCTGCTTCAACTAGC
ACTACTGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2VHI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

91.463

100

0.915
  comO Acinetobacter baylyi ADP1

67.347

99.593

0.671