Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC768_RS16840 Genome accession   NZ_CP061675
Coordinates   3498120..3498530 (-) Length   136 a.a.
NCBI ID   WP_077169023.1    Uniprot ID   A0A7H2TZ88
Organism   Acinetobacter seifertii strain AS17     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3493120..3503530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC768_RS16810 (IC768_16810) - 3493207..3493476 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  IC768_RS16815 (IC768_16815) rapZ 3493473..3494324 (-) 852 WP_019458134.1 RNase adapter RapZ -
  IC768_RS16820 (IC768_16820) panC 3494347..3495195 (-) 849 WP_004698600.1 pantoate--beta-alanine ligase -
  IC768_RS16825 (IC768_16825) panB 3495199..3496008 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IC768_RS16830 (IC768_16830) folK 3496052..3496534 (-) 483 WP_004698604.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IC768_RS16835 (IC768_16835) pcnB 3496531..3497994 (-) 1464 WP_068934874.1 polynucleotide adenylyltransferase PcnB -
  IC768_RS16840 (IC768_16840) comEA 3498120..3498530 (-) 411 WP_077169023.1 ComEA family DNA-binding protein Machinery gene
  IC768_RS16845 (IC768_16845) mazG 3498499..3499305 (-) 807 WP_077169024.1 nucleoside triphosphate pyrophosphohydrolase -
  IC768_RS16850 (IC768_16850) - 3499418..3500191 (+) 774 WP_077169025.1 SDR family oxidoreductase -
  IC768_RS16855 (IC768_16855) - 3500237..3502543 (-) 2307 WP_004698623.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15597.79 Da        Isoelectric Point: 10.4093

>NTDB_id=484051 IC768_RS16840 WP_077169023.1 3498120..3498530(-) (comEA) [Acinetobacter seifertii strain AS17]
MRYSMRHWKNNCFILMMLSLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNISKPSHSYGSKNSYTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=484051 IC768_RS16840 WP_077169023.1 3498120..3498530(-) (comEA) [Acinetobacter seifertii strain AS17]
ATGCGATACAGCATGAGACATTGGAAAAATAATTGCTTTATTTTAATGATGTTGTCCTTAGGAGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGCCTTCTCATTCTTATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGATTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGGCCTGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2TZ88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

88.235

100

0.882
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

43.382

100

0.434