Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   IC769_RS17470 Genome accession   NZ_CP061672
Coordinates   3713699..3714829 (+) Length   376 a.a.
NCBI ID   WP_191108848.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS23     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3708699..3719829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS17445 (IC769_17440) - 3708961..3709167 (-) 207 WP_039252952.1 hypothetical protein -
  IC769_RS17450 (IC769_17445) - 3709221..3711335 (-) 2115 WP_068933974.1 TonB-dependent copper receptor -
  IC769_RS17455 (IC769_17450) - 3711410..3711835 (-) 426 WP_004705923.1 DUF2946 family protein -
  IC769_RS17460 (IC769_17455) def 3711871..3712401 (-) 531 WP_004705924.1 peptide deformylase -
  IC769_RS17465 (IC769_17460) tsaP 3712524..3713678 (+) 1155 WP_086496011.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IC769_RS17470 (IC769_17465) dprA 3713699..3714829 (+) 1131 WP_191108848.1 DNA-processing protein DprA Machinery gene
  IC769_RS17475 (IC769_17470) - 3714880..3715449 (+) 570 WP_019458003.1 L-threonylcarbamoyladenylate synthase -
  IC769_RS17480 (IC769_17475) - 3715839..3716759 (-) 921 WP_004705929.1 DMT family transporter -
  IC769_RS17485 (IC769_17480) - 3716866..3717519 (-) 654 WP_191108849.1 TetR/AcrR family transcriptional regulator -
  IC769_RS17490 (IC769_17485) - 3717654..3718868 (+) 1215 WP_039252932.1 MFS transporter -
  IC769_RS17495 (IC769_17490) - 3718889..3719653 (+) 765 WP_004705932.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41930.58 Da        Isoelectric Point: 6.5412

>NTDB_id=484026 IC769_RS17470 WP_191108848.1 3713699..3714829(+) (dprA) [Acinetobacter seifertii strain AS23]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGDCEKATQPDGLAKWQSLGLHANHLKRLNEFQTAQGQTEFERLIQQV
QRHTDFILTPDDAGYPTQLLPYTDHPPVIFGRGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEYILAQNGAIISEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKIVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQNSTEEAIVSCTPEIP
EHLINLYQSLDWVGQNIDQLILHHSQPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=484026 IC769_RS17470 WP_191108848.1 3713699..3714829(+) (dprA) [Acinetobacter seifertii strain AS23]
ATGCTTACCCAACTTTCTTCACACCATTACCACACACTTAAAGTGTGGTATTTGGTGCAACACTCGTTAGTTAGCTTTAA
AAAAATTATTGATTATTTTGGAGACTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGCAATCTCTTGGCTTAC
ATGCTAATCACTTAAAGCGTCTAAACGAGTTTCAAACGGCGCAAGGTCAAACCGAGTTTGAACGACTTATACAACAAGTT
CAGCGACATACTGATTTTATTTTAACGCCAGATGATGCTGGCTATCCAACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAGAGGTCAGGCACAAGCATTATTACAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCTAGCCCAC
ATGGTCGTCAGGTGGCTTATGATTTTGCCTATTATTTAAGTGAAAAAGGTTTTTATGTAAGTAGCGGCTTGGCATACGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCTGTTCATCAACGTACGATAGCAGTGACAGGTACAGGTTTAGACAGTACCTA
TCCAGCTCAAAATAAAAAATTGGCAGAATATATTCTGGCGCAGAACGGCGCCATCATTAGTGAATTTTTACCGGGAACAC
CACCACTACAGCAGCATTTTCCACGTAGAAACCGAATTGTTAGCGGTCTGAGTTTAGGCGTATTAGTTGTAGAAGCGACT
TTAAAAAGTGGCTCCCTCATTACTGCCAATAAAGCAGCTGAGCAAGGCAAAATCGTATTTGCCATTCCCGGTCATATTTA
CAGTGAATTTCATCAAGGTTGCCATCAACTTATTCGTGAAGGTGCAATTTTAGTCGATCACCCTGAACAAATTATTGAAG
ACCTCGCCCTACCCACCCAATGGCAGAGCCAACAAAACTCAACAGAGGAGGCAATCGTTTCTTGCACCCCAGAAATTCCA
GAGCATTTGATTAATCTTTATCAGTCTTTAGACTGGGTAGGCCAAAATATTGACCAGCTTATTTTGCATCATTCACAACC
TGTTTCTGAACTCACCTCATCATTGATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGATTGTATTTACGTT
GTCGTTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.691

100

0.907

  dprA Acinetobacter baumannii strain A118

90.16

100

0.902

  dprA Acinetobacter baylyi ADP1

71.654

100

0.726