Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC769_RS15410 Genome accession   NZ_CP061672
Coordinates   3265411..3265821 (-) Length   136 a.a.
NCBI ID   WP_174722532.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS23     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3260411..3270821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS15380 (IC769_15380) - 3260498..3260767 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  IC769_RS15385 (IC769_15385) rapZ 3260764..3261615 (-) 852 WP_191108723.1 RNase adapter RapZ -
  IC769_RS15390 (IC769_15390) panC 3261638..3262486 (-) 849 WP_004698600.1 pantoate--beta-alanine ligase -
  IC769_RS15395 (IC769_15395) panB 3262490..3263299 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IC769_RS15400 (IC769_15400) folK 3263343..3263825 (-) 483 WP_004698604.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IC769_RS15405 (IC769_15405) pcnB 3263822..3265285 (-) 1464 WP_151749928.1 polynucleotide adenylyltransferase PcnB -
  IC769_RS15410 (IC769_15410) comEA 3265411..3265821 (-) 411 WP_174722532.1 ComEA family DNA-binding protein Machinery gene
  IC769_RS15415 (IC769_15415) mazG 3265790..3266596 (-) 807 WP_151749929.1 nucleoside triphosphate pyrophosphohydrolase -
  IC769_RS15420 (IC769_15420) - 3266708..3267481 (+) 774 WP_174735311.1 SDR family oxidoreductase -
  IC769_RS15425 (IC769_15425) - 3267527..3269833 (-) 2307 WP_004698623.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15517.81 Da        Isoelectric Point: 10.4105

>NTDB_id=484013 IC769_RS15410 WP_174722532.1 3265411..3265821(-) (comEA) [Acinetobacter seifertii strain AS23]
MRYSMRIWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSYTKSSNGSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=484013 IC769_RS15410 WP_174722532.1 3265411..3265821(-) (comEA) [Acinetobacter seifertii strain AS23]
ATGCGATACAGCATGAGAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGCGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGGCTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGGCCTGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

87.5

100

0.875
  comEA Acinetobacter baumannii D1279779

86.029

100

0.86
  comEA Acinetobacter baylyi ADP1

49.091

80.882

0.397