Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   J7D37_RS08265 Genome accession   NZ_CP072526
Coordinates   1703735..1704370 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698735..1709370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS08240 (J7D37_08240) - 1699575..1700588 (+) 1014 WP_001096100.1 aminoglycoside phosphotransferase family protein -
  J7D37_RS08245 (J7D37_08245) murU 1700588..1701277 (+) 690 WP_038348270.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  J7D37_RS08250 (J7D37_08250) rsmG 1701365..1701997 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  J7D37_RS08255 (J7D37_08255) - 1702019..1702801 (+) 783 WP_000057212.1 ParA family protein -
  J7D37_RS08260 (J7D37_08260) - 1702798..1703685 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  J7D37_RS08265 (J7D37_08265) exbB 1703735..1704370 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  J7D37_RS08270 (J7D37_08270) - 1704386..1704814 (+) 429 WP_000669683.1 ExbD/TolR family protein -
  J7D37_RS08275 (J7D37_08275) msbA 1704811..1706538 (+) 1728 WP_038348269.1 lipid A export permease/ATP-binding protein MsbA -
  J7D37_RS08280 (J7D37_08280) lpxK 1706541..1707551 (+) 1011 WP_038348268.1 tetraacyldisaccharide 4'-kinase -
  J7D37_RS08285 (J7D37_08285) kdsB 1707562..1708323 (+) 762 WP_038348267.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J7D37_RS08290 (J7D37_08290) - 1708335..1709315 (+) 981 WP_038348266.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=483936 J7D37_RS08265 WP_000264037.1 1703735..1704370(+) (exbB) [Acinetobacter baumannii strain DETAB-E227]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=483936 J7D37_RS08265 WP_000264037.1 1703735..1704370(+) (exbB) [Acinetobacter baumannii strain DETAB-E227]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393