Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC772_RS15900 Genome accession   NZ_CP061664
Coordinates   3436146..3436556 (-) Length   136 a.a.
NCBI ID   WP_039251138.1    Uniprot ID   A0A7H2V962
Organism   Acinetobacter seifertii strain AS28     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3431146..3441556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS15870 (IC772_15860) - 3431233..3431502 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  IC772_RS15875 (IC772_15865) rapZ 3431499..3432350 (-) 852 WP_019458134.1 RNase adapter RapZ -
  IC772_RS15880 (IC772_15870) panC 3432373..3433221 (-) 849 WP_191015782.1 pantoate--beta-alanine ligase -
  IC772_RS15885 (IC772_15875) panB 3433225..3434034 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IC772_RS15890 (IC772_15880) folK 3434078..3434560 (-) 483 WP_004698604.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IC772_RS15895 (IC772_15885) pcnB 3434557..3436020 (-) 1464 WP_077166045.1 polynucleotide adenylyltransferase PcnB -
  IC772_RS15900 (IC772_15890) comEA 3436146..3436556 (-) 411 WP_039251138.1 ComEA family DNA-binding protein Machinery gene
  IC772_RS15905 (IC772_15895) mazG 3436525..3437331 (-) 807 WP_191015784.1 nucleoside triphosphate pyrophosphohydrolase -
  IC772_RS15910 (IC772_15900) - 3437443..3438216 (+) 774 WP_191015786.1 SDR family oxidoreductase -
  IC772_RS15915 (IC772_15905) - 3438675..3439985 (+) 1311 WP_410548998.1 COG3014 family protein -
  IC772_RS15920 (IC772_15910) - 3440005..3440415 (+) 411 WP_004698617.1 YcfL family protein -
  IC772_RS15925 (IC772_15915) lpoB 3440501..3441103 (+) 603 WP_039251132.1 penicillin-binding protein activator LpoB -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15575.84 Da        Isoelectric Point: 10.3101

>NTDB_id=483936 IC772_RS15900 WP_039251138.1 3436146..3436556(-) (comEA) [Acinetobacter seifertii strain AS28]
MRYSMRIWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSYTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=483936 IC772_RS15900 WP_039251138.1 3436146..3436556(-) (comEA) [Acinetobacter seifertii strain AS28]
ATGCGATACAGCATGAGAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGGGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTTATACCAAGAGTTCTAATGACTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATCGACGAAATTAAAAATGTCAAAGGAATCGGGCCTGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2V962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

88.235

100

0.882
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397