Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC776_RS03065 Genome accession   NZ_CP061646
Coordinates   642795..643205 (+) Length   136 a.a.
NCBI ID   WP_039251138.1    Uniprot ID   A0A7H2V962
Organism   Acinetobacter seifertii strain AS39     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 637795..648205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC776_RS03050 (IC776_03050) - 638784..641090 (+) 2307 WP_004698623.1 RelA/SpoT family protein -
  IC776_RS03055 (IC776_03055) - 641135..641908 (-) 774 WP_191012632.1 SDR family oxidoreductase -
  IC776_RS03060 (IC776_03060) mazG 642020..642826 (+) 807 WP_191012633.1 nucleoside triphosphate pyrophosphohydrolase -
  IC776_RS03065 (IC776_03065) comEA 642795..643205 (+) 411 WP_039251138.1 ComEA family DNA-binding protein Machinery gene
  IC776_RS03070 (IC776_03070) pcnB 643331..644794 (+) 1464 WP_068934874.1 polynucleotide adenylyltransferase PcnB -
  IC776_RS03075 (IC776_03075) folK 644791..645273 (+) 483 WP_191012634.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IC776_RS03080 (IC776_03080) panB 645317..646126 (+) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IC776_RS03085 (IC776_03085) panC 646130..646978 (+) 849 WP_004698600.1 pantoate--beta-alanine ligase -
  IC776_RS03090 (IC776_03090) rapZ 647001..647852 (+) 852 WP_019458134.1 RNase adapter RapZ -
  IC776_RS03095 (IC776_03095) - 647849..648118 (+) 270 WP_019458135.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15575.84 Da        Isoelectric Point: 10.3101

>NTDB_id=483807 IC776_RS03065 WP_039251138.1 642795..643205(+) (comEA) [Acinetobacter seifertii strain AS39]
MRYSMRIWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSYTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=483807 IC776_RS03065 WP_039251138.1 642795..643205(+) (comEA) [Acinetobacter seifertii strain AS39]
ATGCGATACAGCATGAGAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGCGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGATTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGCCCCGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2V962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

88.235

100

0.882
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397