Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC778_RS17905 Genome accession   NZ_CP061634
Coordinates   3748244..3750370 (-) Length   708 a.a.
NCBI ID   WP_151792203.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3743244..3755370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC778_RS17890 (IC778_17885) - 3745663..3746536 (-) 874 Protein_3511 hypothetical protein -
  IC778_RS17895 (IC778_17890) aroB 3746552..3747634 (-) 1083 WP_077168926.1 3-dehydroquinate synthase -
  IC778_RS17900 (IC778_17895) aroK 3747663..3748232 (-) 570 WP_004705195.1 shikimate kinase AroK -
  IC778_RS17905 (IC778_17900) pilQ 3748244..3750370 (-) 2127 WP_151792203.1 type IV pilus secretin PilQ family protein Machinery gene
  IC778_RS17910 (IC778_17905) pilP 3750432..3750959 (-) 528 WP_077168924.1 pilus assembly protein PilP Machinery gene
  IC778_RS17915 (IC778_17910) pilO 3750970..3751710 (-) 741 WP_077168923.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC778_RS17920 (IC778_17915) pilN 3751707..3752351 (-) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  IC778_RS17925 (IC778_17920) pilM 3752351..3753409 (-) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76596.11 Da        Isoelectric Point: 7.2129

>NTDB_id=483745 IC778_RS17905 WP_151792203.1 3748244..3750370(-) (pilQ) [Acinetobacter seifertii strain AS41]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKKSKI
AVATNEASSVDVTSDDVRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTNKPIPAATAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLARRLNVNDFATPVSSIDAYNEKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSTSASYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVTELIKAEDDEAKALAQTIKLAPIQTDYIRLSYAKAIDVLKLIEDTRDGKGAVANRTANSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLRDPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLTTTISGAGSAATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTTNTQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=483745 IC778_RS17905 WP_151792203.1 3748244..3750370(-) (pilQ) [Acinetobacter seifertii strain AS41]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAAGCGCAACAAAGTTTAAAGAAGTCTAAAATT
GCTGTTGCAACGAATGAAGCAAGTTCCGTTGATGTGACTTCAGATGATGTACGTTCACGCTTAACTGTAAATCTAAAAGA
TGCTGGTGCTTTTACAACGCGCGTGGAAGGCAATACTTTTATTCTAAAAATTAATTCAGCTCAAACAACGAATAAACCGA
TACCAGCAGCTACCGCACAACCACAAGGTGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAGGTTGTTATAAGAACATTAGGTACAAA
GATTCCGACACATTTAGCACGTCGTTTAAATGTAAATGATTTTGCAACGCCCGTATCAAGTATCGATGCTTATAATGAAA
AAGGTGCTGGTGTAATCACAATTCAGTCATCTGGTAGTTATGAATATATGGCTTATCAAGCTGAAAATAAGCTCACTATT
AGTTTGAAACGTCCACAAGATAAAAGTACATCAGCTTCGTATAAAGCACCAAGTTATTCTGGTAATAAGCTTTCATTAGA
CTTCCAAGACATTGAAGTGCGTCGTGTATTACAGTTGCTTGCCGATTTTACAGGCATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAACATCACGCTACGTTTGAAAGATGTACCTTGGGATCAAGCACTAGATATTATTTTAAAAACTAAAAATCTT
GATAAACGTCGTAATGGAAATGTAATTTGGATTGCTCCTGTTACTGAATTAATTAAAGCAGAAGATGATGAGGCAAAAGC
CTTAGCTCAAACGATTAAGTTAGCGCCAATCCAAACAGATTATATTCGTTTGAGTTATGCGAAAGCGATTGATGTGCTTA
AGTTGATTGAAGATACTCGTGATGGTAAAGGTGCAGTTGCAAATCGTACCGCAAACTCTGATTCTCTTGCGTTGGAGAGC
TTATTAAGTTCACGTGGTAGTGCTGTTGCTGATACCCGGACTAATACTTTGATTGTAAATGATACAGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAACTACTTGATGTGCAAGTTAAGCAGGTGATGGTTGAAGCGCGTATCGTCAGAGCGTCTA
CGTCATTTACTAAAGAACTTGGAGTTAAGTGGGGTATTCTTTCACAAGGTATTACTAATAATAAAAATTTATTGGTTGGT
GGTAGTGAAACAACTTTATGGAATTTACGTGACCCTAAAAAAGATGAAACTACTGGAGGCTATAAATATACCATCGAACG
TCCAGATAACTTAAACGTTGATTTGGGAGTCTCTAATCCGGCGGGAAGTATTGCCTTTGGTCTTATCAGTATGTCTGATT
TCATGTTAGATCTTGAACTCTCAGCTTTACAGGCTGATGGTTATGGTGAAGTCATTTCAACCCCTAAAGTCATGACTGCC
GATAAGCAAACTGCAAAAGTTGCCACGGGTCAACAAGTTCCTTATCTAACGACAACGATATCTGGTGCGGGTTCAGCAGC
CACAACATCATTTAAAGATGCTCTTTTAAGTCTTGATGTTACACCTAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TAGATATTTCTAAGGATTCTGTGGCGGGTGAAGCGCCAAATGGTGAGTTAATTCTGAATAAGAATAATATTAATACCAAT
GTGCTGGTTGATAACGGAGAAACCGTCATTTTAGGTGGTGTATTCGAGCAAACAACGACAAATACCCAAACTAAAGTTCC
ATTCTTTGGGGATATTCCTTTAGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTT
TCGTAACACCACGAATTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

AMIN domain (AMIN)

(39-121)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

87.517

100

0.891
  pilQ Acinetobacter baumannii strain A118

87.379

100

0.89
  comQ Acinetobacter baylyi ADP1

72.905

100

0.737
  pilQ Pseudomonas aeruginosa PAK

39.915

99.435

0.397