Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IC778_RS01175 Genome accession   NZ_CP061634
Coordinates   248619..250040 (-) Length   473 a.a.
NCBI ID   WP_151792410.1    Uniprot ID   A0A7H2QY52
Organism   Acinetobacter seifertii strain AS41     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 243619..255040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC778_RS01160 (IC778_01160) lptG 244672..245742 (+) 1071 WP_039254238.1 LPS export ABC transporter permease LptG -
  IC778_RS01165 (IC778_01165) gpmI 245868..247415 (+) 1548 WP_151792411.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IC778_RS01170 (IC778_01170) - 247431..248615 (+) 1185 WP_004699262.1 S41 family peptidase -
  IC778_RS01175 (IC778_01175) pilR 248619..250040 (-) 1422 WP_151792410.1 sigma-54-dependent transcriptional regulator Regulator
  IC778_RS01180 (IC778_01180) pilS 250065..251633 (-) 1569 WP_215902045.1 sensor histidine kinase Regulator
  IC778_RS01185 (IC778_01185) - 251644..252279 (-) 636 WP_019457005.1 response regulator -
  IC778_RS01190 (IC778_01190) pbpG 252495..253541 (+) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC778_RS01195 (IC778_01195) thrC 253649..254788 (-) 1140 WP_151792409.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53225.42 Da        Isoelectric Point: 6.5064

>NTDB_id=483716 IC778_RS01175 WP_151792410.1 248619..250040(-) (pilR) [Acinetobacter seifertii strain AS41]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPINQVHLDQLLQKALNRQQTDQDFAETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPLGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPPKQLSDAAETYLLQQHFPGNVRELRNMIERAITLSDDAQIDVPHLHPAPLRANISSSVPLVSQT
IQNNVTTPQIVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=483716 IC778_RS01175 WP_151792410.1 248619..250040(-) (pilR) [Acinetobacter seifertii strain AS41]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGCT
TAACCGATTTAAATCTACCTGATGGTAGCGGGTTAGACTTAGTCAAACATGTCTCTCAAAACTACCCCAACACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTGAATAAACC
TATTAACCAAGTCCATTTAGATCAGTTATTGCAAAAGGCGCTCAATCGGCAACAAACAGATCAAGACTTTGCAGAAACAG
CGCTAGAAAATAAATTATTAATCGGCCGTTCTCTACCTATTCAACAATTACGCATTGCAATTAAAAAAATTGCTCGCTCA
CAAGCACCTGTATTTGTTACAGGTGAGTCAGGAACAGGTAAAGAAGTAGTTGCCAACCTAGTTCATCGGTTGAGTAACCG
TAGTGAAGGTCCTTTTATTGCAATTAACTGCGGCGCCATTCCAACTGAACTCATGGAAAGTGAGCTGTTTGGACATAAAA
AAGGCAGTTTTACTGGGGCAACTCAAGATAAACAGGGCCTGATTTTATCGGCTCACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTCAGCATGCAAGTCAAACTACTGCGTGCGGTACAGGAAAAAAAGATCCGTCCTCTCGGTTCCGA
TCAGGAAATTGATGTTGATTTCCGTGTCATTAGTGCGAGTCATCAAGACTTGGATTTATTGGTTAGACAAGGCAAATTCC
GTCAGGATTTGTTTTTCCGTATCCATGTTATGGATTTGATGTTACCACCCCTACGAGAACGTGGCGAAGATGTCCTTTTA
CTTGCAAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACACCACCCAAACAATTAAGCGACGCAGCCGAGACTTA
TCTCTTACAGCAACACTTTCCTGGCAATGTTCGCGAATTAAGAAACATGATTGAGCGAGCAATCACCCTAAGTGACGATG
CTCAAATTGATGTACCACACTTACATCCAGCGCCATTAAGAGCAAATATCTCTAGCTCAGTACCATTGGTGTCTCAGACT
ATACAAAATAACGTGACAACGCCTCAAATTGTAAAAAAATTGCCAACTGAAGGATTGGAGCGTTATTTAGAGAACATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATAGAACTTTAGCAGCAAAAAAACTAGGAATGACGTTTC
GTTCTTTACGTTATCGTTTGAAAAAATTTGGCTTAGACACCGAGACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2QY52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

93.446

100

0.934
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488