Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IC781_RS05955 Genome accession   NZ_CP061626
Coordinates   1282662..1283369 (-) Length   235 a.a.
NCBI ID   WP_004702771.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277662..1288369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS05935 (IC781_05935) - 1278737..1280056 (+) 1320 WP_004702779.1 adenylosuccinate synthase -
  IC781_RS05940 (IC781_05940) - 1280183..1280500 (+) 318 WP_191011068.1 hypothetical protein -
  IC781_RS05945 (IC781_05945) - 1280618..1281397 (+) 780 WP_031944517.1 M48 family metallopeptidase -
  IC781_RS05950 (IC781_05950) - 1281453..1282502 (-) 1050 WP_086496975.1 NADP(H)-dependent aldo-keto reductase -
  IC781_RS05955 (IC781_05955) crp 1282662..1283369 (-) 708 WP_004702771.1 cAMP-activated global transcriptional regulator CRP Regulator
  IC781_RS05960 (IC781_05960) - 1283809..1284231 (+) 423 WP_039253874.1 OsmC family protein -
  IC781_RS05965 (IC781_05965) - 1284325..1284750 (+) 426 WP_191011069.1 GNAT family N-acetyltransferase -
  IC781_RS05970 (IC781_05970) - 1284747..1285553 (-) 807 WP_191011070.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26540.12 Da        Isoelectric Point: 4.6625

>NTDB_id=483644 IC781_RS05955 WP_004702771.1 1282662..1283369(-) (crp) [Acinetobacter seifertii strain AS48]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENSVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=483644 IC781_RS05955 WP_004702771.1 1282662..1283369(-) (crp) [Acinetobacter seifertii strain AS48]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
GCGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGACGACGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTCCGTACTCGTGATGTTTGTGAAATTGCAGA
AATTTCATATGACAACTTCCACGAACTGAGCAAGCAGTATCCAGATCTTAGCTACGCTGTTTTTGCGCAACTTGTTCGTC
GCTTAAAAAATACAACTCGCAAAATGACTGACCTTGCGTTCATTGACGTATCTGGTCGTATTGCTCGTTGCTTAATCGAC
TTATCTTCACAGCCAGAAGCAATGATCTTGCCGAATGGTCGTCAGATTCGTATCACTCGCCAAGAAATTGGACGTATTGT
TGGATGTTCACGCGAGATGGTTGGTCGTGTATTGAAGACTTTAGAAGATCAAGGCATGATCCAAACTGATGGTAAAGCCA
TTCTCATTTTTGATGCTTCATTAGAAGAGAATTCAGTCACTGATGAAGACTATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.298

100

0.983
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404