Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC782_RS18490 Genome accession   NZ_CP061620
Coordinates   3827076..3827603 (-) Length   175 a.a.
NCBI ID   WP_077168924.1    Uniprot ID   A0A7H2QWN0
Organism   Acinetobacter seifertii strain AS49     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3822076..3832603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC782_RS18470 (IC782_18465) - 3822307..3823180 (-) 874 Protein_3626 hypothetical protein -
  IC782_RS18475 (IC782_18470) aroB 3823196..3824278 (-) 1083 WP_077168926.1 3-dehydroquinate synthase -
  IC782_RS18480 (IC782_18475) aroK 3824307..3824876 (-) 570 WP_004705195.1 shikimate kinase AroK -
  IC782_RS18485 (IC782_18480) pilQ 3824888..3827014 (-) 2127 WP_151792203.1 type IV pilus secretin PilQ family protein Machinery gene
  IC782_RS18490 (IC782_18485) pilP 3827076..3827603 (-) 528 WP_077168924.1 pilus assembly protein PilP Machinery gene
  IC782_RS18495 (IC782_18490) pilO 3827614..3828354 (-) 741 WP_077168923.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC782_RS18500 (IC782_18495) pilN 3828351..3828995 (-) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  IC782_RS18505 (IC782_18500) pilM 3828995..3830053 (-) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19412.60 Da        Isoelectric Point: 8.9898

>NTDB_id=483619 IC782_RS18490 WP_077168924.1 3827076..3827603(-) (pilP) [Acinetobacter seifertii strain AS49]
MKIKQITLYVLVCAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRDQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=483619 IC782_RS18490 WP_077168924.1 3827076..3827603(-) (pilP) [Acinetobacter seifertii strain AS49]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGTTTGTGCTGCTCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATCGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGTCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGTATGCG
GAATAGTCGTGATCAAATATTAGCTCTCATCCAGACGCCAGATCATCAAGTTGAACGCGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGTCCGACTCAGATTGATTTGGTCGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

93.714

100

0.937
  comL Acinetobacter baylyi ADP1

70.349

98.286

0.691