Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC788_RS15375 Genome accession   NZ_CP061596
Coordinates   3266922..3267332 (-) Length   136 a.a.
NCBI ID   WP_039251138.1    Uniprot ID   A0A7H2V962
Organism   Acinetobacter seifertii strain AS59     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3261922..3272332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS15345 (IC788_15345) - 3262009..3262278 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  IC788_RS15350 (IC788_15350) rapZ 3262275..3263126 (-) 852 WP_019458134.1 RNase adapter RapZ -
  IC788_RS15355 (IC788_15355) panC 3263149..3263997 (-) 849 WP_004698600.1 pantoate--beta-alanine ligase -
  IC788_RS15360 (IC788_15360) panB 3264001..3264810 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IC788_RS15365 (IC788_15365) folK 3264854..3265336 (-) 483 WP_191000713.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IC788_RS15370 (IC788_15370) pcnB 3265333..3266796 (-) 1464 WP_191000714.1 polynucleotide adenylyltransferase PcnB -
  IC788_RS15375 (IC788_15375) comEA 3266922..3267332 (-) 411 WP_039251138.1 ComEA family DNA-binding protein Machinery gene
  IC788_RS15380 (IC788_15380) mazG 3267301..3268107 (-) 807 WP_191000715.1 nucleoside triphosphate pyrophosphohydrolase -
  IC788_RS15385 (IC788_15385) - 3268220..3268993 (+) 774 WP_191000716.1 SDR family oxidoreductase -
  IC788_RS15390 (IC788_15390) - 3269039..3271345 (-) 2307 WP_004698623.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15575.84 Da        Isoelectric Point: 10.3101

>NTDB_id=483448 IC788_RS15375 WP_039251138.1 3266922..3267332(-) (comEA) [Acinetobacter seifertii strain AS59]
MRYSMRIWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSYTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=483448 IC788_RS15375 WP_039251138.1 3266922..3267332(-) (comEA) [Acinetobacter seifertii strain AS59]
ATGCGATACAGCATGAGAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGCGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGATTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGCCCCGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2V962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

88.235

100

0.882
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397