Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IC788_RS12420 Genome accession   NZ_CP061596
Coordinates   2642281..2642988 (+) Length   235 a.a.
NCBI ID   WP_004702771.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS59     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2637281..2647988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS12405 (IC788_12405) - 2640098..2640904 (+) 807 WP_191000451.1 peptidoglycan DD-metalloendopeptidase family protein -
  IC788_RS12410 (IC788_12410) - 2640901..2641326 (-) 426 WP_151741671.1 GNAT family N-acetyltransferase -
  IC788_RS12415 (IC788_12415) - 2641419..2641841 (-) 423 WP_039253874.1 OsmC family protein -
  IC788_RS12420 (IC788_12420) crp 2642281..2642988 (+) 708 WP_004702771.1 cAMP-activated global transcriptional regulator CRP Regulator
  IC788_RS12425 (IC788_12425) - 2643148..2644197 (+) 1050 WP_191000452.1 NADP(H)-dependent aldo-keto reductase -
  IC788_RS12430 (IC788_12430) - 2644253..2645032 (-) 780 WP_019458152.1 M48 family metallopeptidase -
  IC788_RS12435 (IC788_12435) - 2645150..2645467 (-) 318 WP_004702777.1 hypothetical protein -
  IC788_RS12440 (IC788_12440) - 2645594..2646913 (-) 1320 WP_004702779.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26540.12 Da        Isoelectric Point: 4.6625

>NTDB_id=483444 IC788_RS12420 WP_004702771.1 2642281..2642988(+) (crp) [Acinetobacter seifertii strain AS59]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENSVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=483444 IC788_RS12420 WP_004702771.1 2642281..2642988(+) (crp) [Acinetobacter seifertii strain AS59]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
GCGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCAGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGACGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTCCGTACTCGTGATGTTTGTGAAATTGCTGA
AATTTCATATGACAACTTCCACGAACTGAGCAAGCAGTATCCAGATCTTAGCTATGCCGTTTTTGCGCAACTTGTTCGTC
GCTTAAAAAATACAACTCGCAAAATGACTGATCTTGCGTTCATTGACGTATCTGGTCGTATTGCTCGTTGCTTAATCGAC
TTATCTTCACAGCCAGAAGCAATGATCTTGCCGAATGGTCGTCAGATTCGTATCACTCGCCAAGAAATTGGACGTATTGT
TGGATGTTCACGCGAGATGGTTGGTCGTGTATTGAAGACTTTAGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCCA
TTCTCATTTTTGATGCTTCATTAGAAGAAAATTCAGTCACTGATGAAGACTATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.298

100

0.983
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404