Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG   Type   Machinery gene
Locus tag   J7U24_RS09055 Genome accession   NZ_CP072440
Coordinates   1732937..1733254 (-) Length   105 a.a.
NCBI ID   WP_011681685.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24730     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1727937..1738254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U24_RS09020 (J7U24_08995) - 1728296..1728958 (-) 663 WP_014727719.1 CPBP family intramembrane glutamic endopeptidase -
  J7U24_RS09025 (J7U24_09000) - 1729055..1729498 (-) 444 WP_041829335.1 hypothetical protein -
  J7U24_RS09030 - 1729572..1729910 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  J7U24_RS09035 - 1729954..1730229 (-) 276 WP_372434690.1 CAAX protease -
  J7U24_RS09040 (J7U24_09010) - 1730241..1730438 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7U24_RS09045 (J7U24_09015) - 1730687..1731880 (-) 1194 WP_014608740.1 acetate kinase -
  J7U24_RS09050 (J7U24_09020) comGH 1731936..1732892 (-) 957 WP_372434691.1 class I SAM-dependent methyltransferase Machinery gene
  J7U24_RS09055 (J7U24_09025) comGG 1732937..1733254 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  J7U24_RS09060 (J7U24_09030) comGF 1733232..1733669 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7U24_RS09065 (J7U24_09035) comGE 1733653..1733946 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  J7U24_RS09070 (J7U24_09040) comGD 1733918..1734346 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7U24_RS09075 (J7U24_09045) comGC 1734306..1734632 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7U24_RS09080 (J7U24_09050) comGB 1734629..1735729 (-) 1101 WP_142350125.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7U24_RS09085 (J7U24_09055) comGA/cglA/cilD 1735611..1736552 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  J7U24_RS09090 (J7U24_09060) - 1736633..1736995 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence


Protein


Download         Length: 105 a.a.        Molecular weight: 11851.01 Da        Isoelectric Point: 10.6334

>NTDB_id=483339 J7U24_RS09055 WP_011681685.1 1732937..1733254(-) (comGG) [Streptococcus thermophilus strain S24730]
MLLKKQVRGGVLLYALFMAGIFILLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVVVRVVSKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=483339 J7U24_RS09055 WP_011681685.1 1732937..1733254(-) (comGG) [Streptococcus thermophilus strain S24730]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTATACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGGTTGTCAGAGTTGTCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429

  comGG Streptococcus mutans UA159

45.455

94.286

0.429

  comGG/cglG Streptococcus pneumoniae Rx1

43.333

85.714

0.371

  comGG/cglG Streptococcus pneumoniae TIGR4

43.333

85.714

0.371

  comGG/cglG Streptococcus pneumoniae D39

43.333

85.714

0.371

  comGG/cglG Streptococcus pneumoniae R6

43.333

85.714

0.371

  comGG/cglG Streptococcus mitis NCTC 12261

42.222

85.714

0.362