Detailed information NTG0483296

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IC793_RS17195
• Genome accession: NZ_CP061571
• Coordinates: 3535280..3536140 (+)
• Length: 286 a.a.
• NCBI ID: WP_151740586.1
• Uniprot ID: -
• Organism: Acinetobacter seifertii strain AS70
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3530280..3541140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC793_RS17175 (IC793_17170)	secG	3530889..3531218 (-)	330	WP_002156913.1	preprotein translocase subunit SecG	-
IC793_RS17180 (IC793_17175)	tpiA	3531231..3532025 (-)	795	WP_151740589.1	triose-phosphate isomerase	-
IC793_RS17185 (IC793_17180)	pilB	3532315..3534027 (+)	1713	WP_191102339.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IC793_RS17190 (IC793_17185)	-	3534055..3535280 (+)	1226	Protein_3395	type II secretion system F family protein	-
IC793_RS17195 (IC793_17190)	pilD	3535280..3536140 (+)	861	WP_151740586.1	A24 family peptidase	Machinery gene
IC793_RS17200 (IC793_17195)	coaE	3536142..3536738 (+)	597	WP_191012501.1	dephospho-CoA kinase	-
IC793_RS17205 (IC793_17200)	-	3536735..3537649 (-)	915	WP_049064242.1	DMT family transporter	-
IC793_RS17210 (IC793_17205)	rlmB	3537685..3538434 (-)	750	WP_039251214.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IC793_RS17215 (IC793_17210)	-	3538537..3538863 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IC793_RS21565	-	3538940..3539375 (-)	436	Protein_3401	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32076.50 Da
• Isoelectric Point: 7.8340

>NTDB_id=483296 IC793_RS17195 WP_151740586.1 3535280..3536140(+) (pilD) [Acinetobacter seifertii strain AS70]
MQDIIAYFIQNLTALYVAVALVSLCIGSFLNVVIYRTPKMMEQEWQQECQMLLNPEQPIIDHGKLTLSKPASSCPKCHQS
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSVVVVMFFGATIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=483296 IC793_RS17195 WP_151740586.1 3535280..3536140(+) (pilD) [Acinetobacter seifertii strain AS70]
ATGCAAGACATCATTGCTTATTTTATTCAAAACCTAACTGCACTTTATGTTGCGGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTGAATGTAGTGATTTATCGGACTCCTAAAATGATGGAGCAAGAATGGCAACAAGAATGTCAAATGCTCCTAA
ATCCAGAGCAACCCATTATTGACCATGGGAAACTAACATTAAGCAAACCTGCTTCATCATGTCCAAAGTGCCATCAATCG
ATTCGTTGGTATCAAAATATTCCTGTCATAAGCTGGCTTGTGCTAAGAGGAAAATGTGGTCATTGCCAACATCCTATCAG
CATTCGTTATCCAGTAATTGAACTACTCACCATGCTATGCTCTGTAGTTGTGGTCATGTTTTTTGGCGCAACCATACAAA
TGCTTTTTGGACTCGTCTTGACTTGGGTCCTGATTGCCCTCACTTTCATAGACTTTGATACTCAGCTGCTACCTGACCGT
TTTACCTTACCTTTAGCTGCGCTTGGTTTAGGTATTAACACCTTTAATATTTACACCTCACCTAACTCAGCTATTTGGGG
TTATTTAATCGGCTTTTTATGTCTCTGGATTGTGTATTACTTATTTAAAGTGATTACAGGTAAAGAAGGTATGGGCTATG
GCGACTTTAAGTTACTTGCAGCATTGGGCGCATGGATGGGGCCATTGATGCTACCGTTAATTGTGTTATTGTCGTCTTTA
TTGGGTGCAATCATTGGCATCATCTTATTAAAGTTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	53.137	94.755	0.504
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437