Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC796_RS16145 Genome accession   NZ_CP061561
Coordinates   3295477..3295887 (-) Length   136 a.a.
NCBI ID   WP_151684300.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS73     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3290477..3300887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC796_RS16115 (IC796_16110) - 3290564..3290833 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  IC796_RS16120 (IC796_16115) rapZ 3290830..3291681 (-) 852 WP_019458134.1 RNase adapter RapZ -
  IC796_RS16125 (IC796_16120) panC 3291704..3292552 (-) 849 WP_004698600.1 pantoate--beta-alanine ligase -
  IC796_RS16130 (IC796_16125) panB 3292556..3293365 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IC796_RS16135 (IC796_16130) folK 3293409..3293891 (-) 483 WP_004698604.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IC796_RS16140 (IC796_16135) pcnB 3293888..3295351 (-) 1464 WP_068934874.1 polynucleotide adenylyltransferase PcnB -
  IC796_RS16145 (IC796_16140) comEA 3295477..3295887 (-) 411 WP_151684300.1 ComEA family DNA-binding protein Machinery gene
  IC796_RS16150 (IC796_16145) mazG 3295856..3296662 (-) 807 WP_151684298.1 nucleoside triphosphate pyrophosphohydrolase -
  IC796_RS16155 (IC796_16150) - 3296774..3297547 (+) 774 WP_100191977.1 SDR family oxidoreductase -
  IC796_RS16160 (IC796_16155) - 3298005..3299315 (+) 1311 WP_371864362.1 COG3014 family protein -
  IC796_RS16165 (IC796_16160) - 3299335..3299745 (+) 411 WP_004698617.1 YcfL family protein -
  IC796_RS16170 (IC796_16165) lpoB 3299831..3300433 (+) 603 WP_039251132.1 penicillin-binding protein activator LpoB -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15648.90 Da        Isoelectric Point: 10.2483

>NTDB_id=483212 IC796_RS16145 WP_151684300.1 3295477..3295887(-) (comEA) [Acinetobacter seifertii strain AS73]
MRYSMRHWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSYTKSSYDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=483212 IC796_RS16145 WP_151684300.1 3295477..3295887(-) (comEA) [Acinetobacter seifertii strain AS73]
ATGCGATACAGCATGAGACACTGGAAAAATAATTGCTTTATTTTAATGATGTTGTGCTTAGGGGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTTATACCAAGAGTTCTTATGACTCTACAGGGCAAATTCACTTGAATCAG
GCCACGGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGCCCCGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

87.5

100

0.875
  comEA Acinetobacter baumannii D1279779

86.029

100

0.86
  comEA Acinetobacter baylyi ADP1

41.353

97.794

0.404