Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   IC797_RS17490 Genome accession   NZ_CP061556
Coordinates   3688600..3689730 (+) Length   376 a.a.
NCBI ID   WP_191105760.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS74     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3683600..3694730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC797_RS17465 (IC797_17465) - 3683865..3684071 (-) 207 WP_039252952.1 hypothetical protein -
  IC797_RS17470 (IC797_17470) - 3684125..3686238 (-) 2114 Protein_3426 TonB-dependent copper receptor -
  IC797_RS17475 (IC797_17475) - 3686313..3686738 (-) 426 WP_004705923.1 DUF2946 family protein -
  IC797_RS17480 (IC797_17480) def 3686774..3687302 (-) 529 Protein_3428 peptide deformylase -
  IC797_RS17485 (IC797_17485) tsaP 3687425..3688579 (+) 1155 WP_019458005.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IC797_RS17490 (IC797_17490) dprA 3688600..3689730 (+) 1131 WP_191105760.1 DNA-processing protein DprA Machinery gene
  IC797_RS17495 (IC797_17495) - 3689781..3690350 (+) 570 WP_019458003.1 L-threonylcarbamoyladenylate synthase -
  IC797_RS17500 (IC797_17500) - 3690740..3691660 (-) 921 WP_081400353.1 DMT family transporter -
  IC797_RS17505 (IC797_17505) - 3691767..3692420 (-) 654 WP_081400352.1 TetR/AcrR family transcriptional regulator -
  IC797_RS17510 (IC797_17510) - 3692556..3693770 (+) 1215 WP_019458000.1 MFS transporter -
  IC797_RS17515 (IC797_17515) - 3693791..3694555 (+) 765 WP_019457999.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41848.47 Da        Isoelectric Point: 6.4979

>NTDB_id=483187 IC797_RS17490 WP_191105760.1 3688600..3689730(+) (dprA) [Acinetobacter seifertii strain AS74]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGDCEKATQPDGLAKWQSLGLHANHLKRLNEFQTAQGQTEFERLIQQV
QQHTDFILTPDDAGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIISEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKIVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQNSTEEAIVSCTPEIP
EHLINLYQSLDWVGQNIDQLVLHHSQPISELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=483187 IC797_RS17490 WP_191105760.1 3688600..3689730(+) (dprA) [Acinetobacter seifertii strain AS74]
ATGCTTACCCAACTTTCTTCACACCATTACCACACACTTAAAGTGTGGTATTTGGTGCAACACTCGTTAGTTAGCTTTAA
AAAAATTATTGATTATTTTGGAGACTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGCAATCTCTTGGCTTAC
ATGCTAATCACTTAAAGCGTCTAAATGAGTTTCAAACGGCGCAAGGTCAAACCGAGTTTGAACGACTCATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACACCAGATGATGCTGGCTATCCAACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAAGCATTATTACAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCTAGCCCAC
ATGGTCGTCAGGTGGCTTATGATTTTGCCTATTATTTAAGTGAAAAGGGTTTTTATGTAAGTAGCGGCTTGGCATACGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCTGTTCATCAACGTACGATAGCAGTGACAGGTACAGGTTTAGACAGTACCTA
TCCAGCTCAAAATAAAAAATTGGCAGAACATATTCTGGCTCAGAACGGCGCCATCATTAGTGAGTTTTTACCGGGAACAC
CACCACTACAGCAGCATTTTCCACGTAGAAACCGAATTGTTAGCGGTCTGAGTTTAGGCGTATTAGTTGTAGAAGCGACT
TTAAAAAGTGGCTCCCTCATTACTGCCAATAAAGCAGCTGAGCAAGGCAAAATCGTATTTGCCATTCCCGGTCATATTTA
CAGTGAATTTCATCAAGGTTGCCATCAACTTATTCGTGAAGGTGCAATTTTAGTCGATCACCCTGAACAAATTATTGAAG
ACCTCGCCCTACCCACCCAATGGCAGAGCCAACAAAACTCAACAGAGGAGGCAATCGTTTCTTGCACCCCAGAAATTCCA
GAGCATTTGATTAATCTTTATCAGTCTTTAGACTGGGTAGGCCAAAATATTGACCAGCTTGTTTTGCATCATTCACAACC
TATTTCTGAACTCACCTCATCATTGATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGATTGTATTTACGTT
GTCGTTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

90.957

100

0.91

  dprA Acinetobacter baumannii D1279779

90.957

100

0.91

  dprA Acinetobacter baylyi ADP1

71.916

100

0.729