Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC797_RS15555 Genome accession   NZ_CP061556
Coordinates   3276471..3276881 (-) Length   136 a.a.
NCBI ID   WP_077166044.1    Uniprot ID   A0AB35W0B2
Organism   Acinetobacter seifertii strain AS74     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3271471..3281881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC797_RS15525 (IC797_15525) - 3271558..3271827 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  IC797_RS15530 (IC797_15530) rapZ 3271824..3272675 (-) 852 WP_019458134.1 RNase adapter RapZ -
  IC797_RS15535 (IC797_15535) panC 3272698..3273546 (-) 849 WP_191105673.1 pantoate--beta-alanine ligase -
  IC797_RS15540 (IC797_15540) panB 3273550..3274359 (-) 810 WP_191105674.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IC797_RS15545 (IC797_15545) folK 3274403..3274885 (-) 483 WP_004698604.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IC797_RS15550 (IC797_15550) pcnB 3274882..3276345 (-) 1464 WP_191105675.1 polynucleotide adenylyltransferase PcnB -
  IC797_RS15555 (IC797_15555) comEA 3276471..3276881 (-) 411 WP_077166044.1 ComEA family DNA-binding protein Machinery gene
  IC797_RS15560 (IC797_15560) mazG 3276850..3277656 (-) 807 WP_191105676.1 nucleoside triphosphate pyrophosphohydrolase -
  IC797_RS15565 (IC797_15565) - 3277768..3278541 (+) 774 WP_191105677.1 SDR family oxidoreductase -
  IC797_RS15570 (IC797_15570) - 3278587..3280893 (-) 2307 WP_004698623.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15589.91 Da        Isoelectric Point: 10.3833

>NTDB_id=483175 IC797_RS15555 WP_077166044.1 3276471..3276881(-) (comEA) [Acinetobacter seifertii strain AS74]
MRYSMRIWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLKVSKPSHSYGSKNSYTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=483175 IC797_RS15555 WP_077166044.1 3276471..3276881(-) (comEA) [Acinetobacter seifertii strain AS74]
ATGCGATACAGCATGAGAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGCGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAAGGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGACTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGCCCCGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

87.5

100

0.875
  comEA Acinetobacter baumannii D1279779

86.029

100

0.86
  comEA Acinetobacter baylyi ADP1

47.748

81.618

0.39