Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   IC797_RS01820 Genome accession   NZ_CP061556
Coordinates   386253..386735 (+) Length   160 a.a.
NCBI ID   WP_191012230.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS74     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 381253..391735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC797_RS01815 (IC797_01815) pilY1 382467..386240 (+) 3774 WP_373369644.1 PilC/PilY family type IV pilus protein Machinery gene
  IC797_RS01820 (IC797_01820) pilY2 386253..386735 (+) 483 WP_191012230.1 type IV pilin protein Machinery gene
  IC797_RS01825 (IC797_01825) pilE 386732..387157 (+) 426 WP_174743602.1 type IV pilin protein Machinery gene
  IC797_RS01830 (IC797_01830) rpsP 387304..387555 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  IC797_RS01835 (IC797_01835) rimM 387575..388123 (+) 549 WP_004705239.1 ribosome maturation factor RimM -
  IC797_RS01840 (IC797_01840) trmD 388169..388924 (+) 756 WP_086496216.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IC797_RS01845 (IC797_01845) rplS 389144..389512 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  IC797_RS01850 (IC797_01850) - 389564..390505 (-) 942 WP_081409789.1 triacylglycerol lipase -
  IC797_RS01855 (IC797_01855) - 390626..391660 (-) 1035 WP_191105889.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17558.82 Da        Isoelectric Point: 9.1549

>NTDB_id=483159 IC797_RS01820 WP_191012230.1 386253..386735(+) (pilY2) [Acinetobacter seifertii strain AS74]
MSKYYNLKFNRGFTLIELMVTLLTLAILVAIAVPSYQSYARRATASAVKSEILKLAERLEQHKSRNFTYRGFTTTSVTLT
RGGYTIQITDDTTAGNLLTSSAANGQTWMIRATTTDSRNLNFIAKNSGLRCQSLTATAVDNDCGGTTTCNTCEANSESWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=483159 IC797_RS01820 WP_191012230.1 386253..386735(+) (pilY2) [Acinetobacter seifertii strain AS74]
ATGAGTAAATACTATAATTTGAAGTTCAATCGGGGTTTTACTCTGATTGAACTTATGGTCACTCTTCTTACTTTAGCTAT
TCTTGTTGCTATTGCTGTTCCTTCTTATCAAAGTTATGCCCGTAGAGCTACCGCATCTGCCGTTAAGAGTGAGATTTTAA
AATTAGCTGAGCGATTGGAGCAGCATAAGTCTAGAAATTTTACCTATAGGGGATTTACCACAACCTCTGTAACGTTAACT
CGTGGGGGGTATACGATTCAGATCACTGATGATACGACTGCTGGTAATTTATTAACGAGTTCTGCTGCGAATGGGCAGAC
ATGGATGATTAGAGCGACTACTACAGATTCCAGAAATCTTAATTTTATTGCTAAAAACTCAGGTTTACGTTGCCAGAGCT
TAACAGCTACTGCTGTTGATAATGATTGTGGTGGAACAACTACATGTAACACATGTGAAGCAAATAGTGAGAGTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

82.5

100

0.825
  comE Acinetobacter baylyi ADP1

36.628

100

0.394