Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   IC797_RS01815 Genome accession   NZ_CP061556
Coordinates   382467..386240 (+) Length   1257 a.a.
NCBI ID   WP_373369644.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS74     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377467..391240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC797_RS01790 (IC797_01790) ispH 378101..379051 (+) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC797_RS01795 (IC797_01795) fimU 379219..379692 (+) 474 WP_134262475.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC797_RS01800 (IC797_01800) pilV 379686..380246 (+) 561 WP_134262473.1 type IV pilus modification protein PilV Machinery gene
  IC797_RS01805 (IC797_01805) pilW 380246..381244 (+) 999 WP_191012233.1 PilW family protein Machinery gene
  IC797_RS01810 (IC797_01810) pilX 381241..382056 (+) 816 WP_191012232.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IC797_RS01815 (IC797_01815) pilY1 382467..386240 (+) 3774 WP_373369644.1 PilC/PilY family type IV pilus protein Machinery gene
  IC797_RS01820 (IC797_01820) pilY2 386253..386735 (+) 483 WP_191012230.1 type IV pilin protein Machinery gene
  IC797_RS01825 (IC797_01825) pilE 386732..387157 (+) 426 WP_174743602.1 type IV pilin protein Machinery gene
  IC797_RS01830 (IC797_01830) rpsP 387304..387555 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  IC797_RS01835 (IC797_01835) rimM 387575..388123 (+) 549 WP_004705239.1 ribosome maturation factor RimM -
  IC797_RS01840 (IC797_01840) trmD 388169..388924 (+) 756 WP_086496216.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IC797_RS01845 (IC797_01845) rplS 389144..389512 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  IC797_RS01850 (IC797_01850) - 389564..390505 (-) 942 WP_081409789.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1257 a.a.        Molecular weight: 134052.12 Da        Isoelectric Point: 6.1533

>NTDB_id=483158 IC797_RS01815 WP_373369644.1 382467..386240(+) (pilY1) [Acinetobacter seifertii strain AS74]
MFSFLENNNPIFNNVSVGLGHFSTYSSGTTGDNNSGEILVPAANLGIVGSAQRVALKNAVAGLEASGGTPTANAFAEAAA
YLMGTRTLSSTTANVAMYFKYYPVLTQTSQTVYYACGNTSASGSTDNTKCTYTPTTIPSQSNLSNYSSNTTSSTNGNITT
YTTYYYKTTGWFYPTTTYYYKTTYSETKVTSSTPNYQSCTAYNSNGCTTWSAASLTNPTTDTYDTQCTINTVSGTCVYQT
KTILGTNSYSGFNSSVQSSKDPDTNYTTYKSPLPPVTQRQSCDGQGVYILSDGEPTNNVNSSVLASALNLSSFSNSGGLS
GGTNWDYMSNFAKALFNGGVIQSDANNATNPANVSIQTAFVGFGSALNALSTTDAKNACKMSSRTQIDRSGDDACSPNQG
TNAVSAPGYGNGGFFPTQSAQGVTDSVIAFINNLGKVPLEPLTTGAISVPYDALNPKNLQEYGYLRAFEPDPANSYLTWR
GNLKKYHVILSGSNAGAFEANSGGLVYDANGAFRSGTKDYWNSSSYNDGGKVFLGGAYSNVPLPTLGQAEEVNSQGNITK
YYYAAKNKIRNLFTDVSTVAADGSLTKISTTNINLLKIPAAPAVNTNPFDTPANTASYVLGKFNSSTGQDVLKAFPVSLK
LKLLNYLGYPTDITATALPSTLTTSNAPYLSMGGSIHSFPVQLTYSGTLDQNGNLTSAREQSILYGSMEGGLHIVDASTG
VEQMVFIPADILNDTVASKALVVGQSDSTAPAQGMDGAWVSDPAYNITTTGSGSSVVSKVTAKQMNIYGGMRMGGSSYYG
LNVLNPSSPQLMFRIGADQSDYSRMGQSWSKPVLANIRYNGAIRRVMIVGGGYDQCYEKPNITLSDSCFSNGKAKGNAVY
IIDAKTGERLWWASDTGSNNDNANMKHSIVSRISTLDRDGDGLVDHLYFGDLGGQVFRVDLNNNQTQTNSTYSSFGIRVV
RLANLATNDTTNDSGNDYTAGNAPRFYEPPTVTIHDYGVRSFITVGIASGDRSTPLDVYPIIGREGMSPSTALSGRPVNN
VYGIIDRDFIKKNLMSLSDSQLETKDLIRSNLRKNPQILRAGETSVGQVFFPSTGTGQAGWYRSLSSTSNGTEKADNSFR
IKGGMKAFEEPIAITGNLIVPVYDPQGTGIVASDPCLPRVVGETDRQTYCLPFGVCLNTDGSINHNKEDNSGFGTDGSKN
LNVIGSGVRNITFVPSEDNPSPQNSCGKLKLSGNEQGTGQWQCTSYLIPARWYERYR

Nucleotide


Download         Length: 3774 bp        

>NTDB_id=483158 IC797_RS01815 WP_373369644.1 382467..386240(+) (pilY1) [Acinetobacter seifertii strain AS74]
ATGTTTTCTTTTTTAGAAAATAATAACCCTATATTTAATAATGTAAGTGTTGGATTGGGACATTTCTCTACATATAGCAG
TGGCACTACTGGAGATAATAATAGTGGTGAAATTTTAGTTCCAGCAGCAAATTTGGGTATTGTCGGATCTGCTCAACGAG
TTGCATTAAAAAATGCTGTAGCTGGATTAGAAGCAAGTGGTGGTACCCCTACAGCGAATGCTTTTGCTGAGGCTGCAGCT
TACTTAATGGGAACACGAACATTAAGCTCGACTACAGCAAACGTGGCAATGTATTTTAAATATTATCCAGTTTTAACTCA
GACGTCACAAACCGTTTATTATGCCTGTGGTAATACTTCAGCTAGTGGTTCAACAGATAATACAAAGTGTACATATACGC
CGACCACAATTCCAAGCCAGTCTAATTTATCTAACTATAGTAGTAATACTACAAGCTCAACAAATGGAAATATAACGACT
TACACCACTTATTATTATAAAACGACTGGATGGTTTTATCCCACAACGACCTATTACTATAAAACTACTTATAGTGAAAC
TAAAGTAACCAGTTCAACACCTAATTATCAAAGCTGTACAGCATATAACTCTAATGGCTGTACTACTTGGAGTGCCGCTT
CTTTAACTAATCCAACAACAGATACCTATGATACGCAATGTACAATTAATACAGTGTCTGGTACATGTGTCTATCAAACT
AAAACAATTTTAGGTACAAACAGTTATAGTGGGTTTAATAGTTCTGTTCAAAGTTCAAAAGATCCAGATACCAACTACAC
TACATATAAATCACCATTACCTCCCGTTACTCAGCGTCAAAGTTGTGATGGACAAGGGGTTTATATTTTGTCTGATGGTG
AACCAACGAATAACGTAAACTCTTCTGTTTTAGCCTCTGCCTTGAACCTTAGTTCGTTTAGTAATAGTGGTGGACTGAGC
GGTGGTACAAACTGGGATTATATGAGTAACTTCGCTAAAGCCTTGTTTAATGGCGGGGTAATTCAAAGTGATGCTAATAA
TGCTACAAACCCAGCTAATGTATCTATACAAACTGCTTTTGTTGGTTTTGGTTCAGCTTTAAATGCCTTAAGCACTACAG
ATGCGAAAAACGCTTGTAAAATGAGTTCTCGTACTCAAATAGATAGAAGCGGAGATGATGCATGCTCTCCGAATCAGGGG
ACAAATGCTGTATCTGCCCCAGGTTATGGTAATGGTGGATTTTTTCCTACTCAAAGTGCGCAGGGAGTAACCGATAGCGT
AATTGCATTTATTAATAACTTAGGGAAAGTACCTTTAGAGCCTCTTACTACTGGAGCGATTTCTGTACCTTATGATGCAT
TGAATCCTAAAAACCTACAGGAATATGGTTATTTACGAGCTTTTGAGCCAGATCCGGCAAATTCTTATTTGACTTGGCGA
GGTAACTTAAAAAAATATCATGTGATTTTATCTGGTTCAAATGCTGGTGCATTTGAAGCGAACTCTGGTGGGCTGGTCTA
TGATGCAAATGGAGCATTCCGTAGTGGTACAAAAGATTATTGGAATAGCTCTAGTTATAATGATGGCGGAAAAGTTTTCT
TAGGAGGAGCCTATAGCAATGTACCATTACCAACTTTAGGTCAGGCAGAAGAGGTAAATTCTCAAGGTAATATTACTAAA
TATTATTATGCAGCAAAAAATAAAATCCGAAATCTGTTTACTGATGTTTCTACCGTGGCTGCAGATGGTAGTTTAACTAA
AATATCAACTACAAATATTAATTTACTGAAAATTCCTGCTGCGCCTGCTGTAAATACAAATCCTTTTGATACACCAGCAA
ATACTGCAAGTTATGTGCTAGGAAAATTTAATAGCTCTACGGGACAAGATGTGTTGAAGGCATTTCCTGTGAGCTTAAAA
TTAAAATTATTAAATTACTTGGGTTATCCGACAGATATTACGGCGACAGCTCTACCAAGCACATTAACCACATCAAATGC
CCCTTATTTATCGATGGGCGGGAGTATCCACTCTTTTCCGGTACAGCTGACTTATAGTGGTACTTTAGATCAAAACGGAA
ATTTAACCAGTGCACGTGAGCAATCTATTCTTTACGGAAGTATGGAAGGCGGATTGCATATCGTAGATGCCTCTACTGGG
GTTGAGCAAATGGTATTTATCCCAGCCGATATATTAAATGATACGGTGGCGTCTAAAGCTTTAGTGGTAGGGCAAAGTGA
TTCAACAGCCCCTGCTCAAGGTATGGATGGAGCATGGGTATCGGACCCAGCATATAACATTACCACTACAGGTTCAGGTA
GTTCAGTAGTATCAAAAGTTACTGCTAAACAAATGAATATTTATGGTGGAATGCGTATGGGTGGCAGTAGCTATTATGGA
TTAAATGTATTAAATCCAAGTTCCCCACAATTAATGTTTAGAATAGGTGCAGATCAATCTGACTATAGCCGTATGGGGCA
AAGCTGGTCTAAGCCCGTACTTGCAAATATTCGTTATAACGGTGCGATTAGACGTGTCATGATTGTTGGCGGTGGTTATG
ATCAATGCTACGAGAAACCAAATATCACGTTGAGTGACTCATGCTTTAGTAATGGTAAGGCAAAAGGAAATGCTGTCTAT
ATTATCGATGCTAAAACCGGAGAGCGTTTATGGTGGGCCAGTGATACAGGTTCAAATAATGATAACGCTAATATGAAGCA
TAGTATTGTTAGCCGTATTAGTACTTTGGACCGAGATGGTGATGGTTTAGTAGATCATTTGTATTTTGGCGATTTAGGCG
GACAAGTCTTTCGTGTAGATCTTAATAATAATCAGACTCAAACTAACTCGACTTATAGTAGTTTCGGTATACGAGTTGTG
AGATTGGCAAATCTGGCAACAAACGATACAACAAATGATAGTGGAAATGATTACACAGCTGGAAATGCCCCTCGTTTTTA
TGAGCCGCCTACCGTAACAATTCATGATTATGGTGTTCGCTCATTTATTACTGTTGGTATCGCTTCTGGTGATCGAAGTA
CACCACTAGATGTTTATCCAATTATTGGCCGGGAAGGTATGTCTCCTAGTACGGCGCTTAGTGGTCGACCTGTAAATAAT
GTTTATGGAATTATTGATAGAGACTTTATAAAAAAGAATTTAATGTCGTTAAGTGATAGTCAGCTTGAAACTAAGGATCT
TATTCGCTCAAATCTGCGGAAAAACCCACAAATATTAAGAGCAGGCGAAACGAGCGTAGGGCAAGTTTTCTTTCCAAGTA
CGGGTACAGGTCAGGCAGGTTGGTACCGATCACTTTCTAGTACGAGTAATGGTACTGAAAAAGCTGATAATAGCTTCCGT
ATTAAAGGGGGAATGAAAGCCTTTGAAGAACCAATAGCAATTACAGGTAATTTAATCGTTCCTGTCTATGATCCTCAAGG
AACAGGTATTGTTGCGTCAGACCCTTGTTTGCCACGTGTAGTCGGTGAAACAGATCGACAAACTTATTGTCTACCATTTG
GAGTGTGTCTGAATACTGATGGATCGATTAATCATAATAAGGAAGATAATAGTGGTTTTGGAACAGATGGATCAAAGAAC
CTAAATGTAATTGGTTCAGGGGTTCGCAATATTACGTTTGTGCCTAGTGAAGATAATCCATCTCCGCAAAACAGTTGTGG
AAAATTAAAGCTATCTGGTAATGAGCAAGGAACAGGGCAGTGGCAATGCACAAGCTATTTGATCCCTGCACGCTGGTATG
AGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(687-947)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

76.033

86.635

0.659