Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC800_RS15295 Genome accession   NZ_CP061543
Coordinates   3259492..3259902 (-) Length   136 a.a.
NCBI ID   WP_077162713.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS80     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3254492..3264902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC800_RS15265 (IC800_15265) - 3254579..3254848 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  IC800_RS15270 (IC800_15270) rapZ 3254845..3255696 (-) 852 WP_019458134.1 RNase adapter RapZ -
  IC800_RS15275 (IC800_15275) panC 3255719..3256567 (-) 849 WP_191107011.1 pantoate--beta-alanine ligase -
  IC800_RS15280 (IC800_15280) panB 3256571..3257380 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IC800_RS15285 (IC800_15285) folK 3257424..3257906 (-) 483 WP_191107012.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IC800_RS15290 (IC800_15290) pcnB 3257903..3259366 (-) 1464 WP_068934874.1 polynucleotide adenylyltransferase PcnB -
  IC800_RS15295 (IC800_15295) comEA 3259492..3259902 (-) 411 WP_077162713.1 ComEA family DNA-binding protein Machinery gene
  IC800_RS15300 (IC800_15300) mazG 3259871..3260677 (-) 807 WP_077162714.1 nucleoside triphosphate pyrophosphohydrolase -
  IC800_RS15305 (IC800_15305) - 3260789..3261562 (+) 774 WP_191107013.1 SDR family oxidoreductase -
  IC800_RS15310 (IC800_15310) - 3261607..3263913 (-) 2307 WP_004698623.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15549.81 Da        Isoelectric Point: 10.3765

>NTDB_id=483047 IC800_RS15295 WP_077162713.1 3259492..3259902(-) (comEA) [Acinetobacter seifertii strain AS80]
MRYSMRIWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSHTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=483047 IC800_RS15295 WP_077162713.1 3259492..3259902(-) (comEA) [Acinetobacter seifertii strain AS80]
ATGCGATACAGCATGAGAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGGGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTCATACTAAGAGTTCTAATGACTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAATGTCAAAGGAATCGGGCCTGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

88.235

100

0.882
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397