Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IC800_RS12350 Genome accession   NZ_CP061543
Coordinates   2601385..2602092 (+) Length   235 a.a.
NCBI ID   WP_004702771.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS80     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2596385..2607092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC800_RS12335 (IC800_12335) - 2599201..2600007 (+) 807 WP_191106747.1 peptidoglycan DD-metalloendopeptidase family protein -
  IC800_RS12340 (IC800_12340) - 2600004..2600429 (-) 426 WP_191106748.1 GNAT family N-acetyltransferase -
  IC800_RS12345 (IC800_12345) - 2600523..2600945 (-) 423 WP_039253874.1 OsmC family protein -
  IC800_RS12350 (IC800_12350) crp 2601385..2602092 (+) 708 WP_004702771.1 cAMP-activated global transcriptional regulator CRP Regulator
  IC800_RS12355 (IC800_12355) - 2602252..2603301 (+) 1050 WP_191106749.1 NADP(H)-dependent aldo-keto reductase -
  IC800_RS12360 (IC800_12360) - 2603357..2604136 (-) 780 WP_019458152.1 M48 family metallopeptidase -
  IC800_RS12365 (IC800_12365) - 2604254..2604571 (-) 318 WP_191106750.1 hypothetical protein -
  IC800_RS12370 (IC800_12370) - 2604698..2606017 (-) 1320 WP_191106751.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26540.12 Da        Isoelectric Point: 4.6625

>NTDB_id=483043 IC800_RS12350 WP_004702771.1 2601385..2602092(+) (crp) [Acinetobacter seifertii strain AS80]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENSVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=483043 IC800_RS12350 WP_004702771.1 2601385..2602092(+) (crp) [Acinetobacter seifertii strain AS80]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
GCGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGACGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTCCGTACTCGTGATGTTTGTGAAATTGCTGA
AATTTCATATGACAACTTCCACGAACTGAGCAAGCAGTATCCAGATCTTAGCTACGCTGTTTTTGCGCAACTTGTTCGTC
GCTTAAAAAATACAACTCGCAAAATGACTGACCTTGCGTTCATTGACGTATCTGGTCGTATTGCTCGTTGCTTAATCGAC
TTATCTTCACAGCCAGAAGCAATGATCTTGCCGAATGGTCGTCAGATTCGTATCACTCGCCAAGAAATTGGACGTATTGT
CGGATGTTCACGCGAGATGGTTGGTCGTGTATTGAAGACTTTAGAAGATCAAGGCATGATCCAAACTGATGGTAAAGCCA
TTCTCATTTTTGATGCTTCATTAGAAGAAAATTCAGTCACTGATGAAGACTATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.298

100

0.983
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404