Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   J7U26_RS00345 Genome accession   NZ_CP072437
Coordinates   60718..61308 (+) Length   196 a.a.
NCBI ID   WP_372430775.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24734     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55718..66308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U26_RS00320 (J7U26_00320) - 56848..57303 (-) 456 Protein_42 DUF3021 domain-containing protein -
  J7U26_RS00325 (J7U26_00325) - 57300..57691 (-) 392 Protein_43 LytTR family DNA-binding domain-containing protein -
  J7U26_RS00330 (J7U26_00330) - 57915..58220 (+) 306 WP_002949050.1 hypothetical protein -
  J7U26_RS00335 (J7U26_00335) hexB 58272..60215 (+) 1944 WP_011225282.1 DNA mismatch repair endonuclease MutL Machinery gene
  J7U26_RS00340 (J7U26_00340) - 60345..60566 (+) 222 WP_002949052.1 hypothetical protein -
  J7U26_RS00345 (J7U26_00345) ruvA 60718..61308 (+) 591 WP_372430775.1 Holliday junction branch migration protein RuvA Machinery gene
  J7U26_RS00350 (J7U26_00350) - 61315..61869 (+) 555 WP_011680604.1 DNA-3-methyladenine glycosylase I -
  J7U26_RS00355 (J7U26_00355) cinA 61965..63236 (+) 1272 WP_011680605.1 competence/damage-inducible protein A Machinery gene
  J7U26_RS00360 (J7U26_00360) recA 63272..64426 (+) 1155 WP_002949056.1 recombinase RecA Machinery gene
  J7U26_RS00365 (J7U26_00365) spx 64603..65001 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21683.04 Da        Isoelectric Point: 6.1036

>NTDB_id=482939 J7U26_RS00345 WP_372430775.1 60718..61308(+) (ruvA) [Streptococcus thermophilus strain S24734]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFKDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=482939 J7U26_RS00345 WP_372430775.1 60718..61308(+) (ruvA) [Streptococcus thermophilus strain S24734]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTAAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66

100

0.673
  ruvA Streptococcus pneumoniae R6

66

100

0.673
  ruvA Streptococcus pneumoniae D39

66

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444