Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   J7T60_RS00360 Genome accession   NZ_CP072436
Coordinates   62880..63470 (+) Length   196 a.a.
NCBI ID   WP_084829275.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57880..68470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS00335 (J7T60_00330) - 59010..59465 (-) 456 Protein_45 DUF3021 domain-containing protein -
  J7T60_RS00340 (J7T60_00335) - 59462..59853 (-) 392 Protein_46 LytTR family DNA-binding domain-containing protein -
  J7T60_RS00345 (J7T60_00340) - 60077..60382 (+) 306 WP_014621013.1 hypothetical protein -
  J7T60_RS00350 (J7T60_00345) hexB 60434..62377 (+) 1944 WP_011225282.1 DNA mismatch repair endonuclease MutL Machinery gene
  J7T60_RS00355 (J7T60_00350) - 62507..62728 (+) 222 WP_002949052.1 hypothetical protein -
  J7T60_RS00360 (J7T60_00355) ruvA 62880..63470 (+) 591 WP_084829275.1 Holliday junction branch migration protein RuvA Machinery gene
  J7T60_RS00365 (J7T60_00360) - 63477..64031 (+) 555 WP_011225284.1 DNA-3-methyladenine glycosylase I -
  J7T60_RS00370 (J7T60_00365) cinA 64127..65398 (+) 1272 WP_084829277.1 competence/damage-inducible protein A Machinery gene
  J7T60_RS00375 (J7T60_00370) recA 65434..66573 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  J7T60_RS00380 (J7T60_00375) spx 66750..67148 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21700.03 Da        Isoelectric Point: 5.6668

>NTDB_id=482837 J7T60_RS00360 WP_084829275.1 62880..63470(+) (ruvA) [Streptococcus thermophilus strain S24735]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKSTELKKVKAFFEDTNETAEKYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=482837 J7T60_RS00360 WP_084829275.1 62880..63470(+) (ruvA) [Streptococcus thermophilus strain S24735]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAATCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGAAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66

100

0.673
  ruvA Streptococcus pneumoniae R6

66

100

0.673
  ruvA Streptococcus pneumoniae D39

66

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.157

100

0.439