Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   J7U23_RS02350 Genome accession   NZ_CP072435
Coordinates   433432..434391 (+) Length   319 a.a.
NCBI ID   WP_002946033.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24736     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 428432..439391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U23_RS02340 (J7U23_02340) metG 428957..430960 (+) 2004 WP_100273571.1 methionine--tRNA ligase -
  J7U23_RS02345 (J7U23_02345) - 431238..432134 (-) 897 WP_084829393.1 LysR family transcriptional regulator -
  J7U23_RS02350 (J7U23_02350) coiA 433432..434391 (+) 960 WP_002946033.1 competence protein CoiA Machinery gene
  J7U23_RS02355 (J7U23_02355) pepF 434402..436207 (+) 1806 WP_022096920.1 oligoendopeptidase F Regulator
  J7U23_RS02360 (J7U23_02360) - 436389..437096 (+) 708 WP_002946027.1 O-methyltransferase -
  J7U23_RS02365 (J7U23_02365) - 437158..438273 (+) 1116 WP_084829394.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37998.89 Da        Isoelectric Point: 9.3040

>NTDB_id=482755 J7U23_RS02350 WP_002946033.1 433432..434391(+) (coiA) [Streptococcus thermophilus strain S24736]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWGREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDGFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=482755 J7U23_RS02350 WP_002946033.1 433432..434391(+) (coiA) [Streptococcus thermophilus strain S24736]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTACGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTTTGGGAACTTGATTGGGGGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGACAGGAGGAGGCTTATCTTAAGGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAGCAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

45.338

97.492

0.442
  coiA Streptococcus pneumoniae D39

45.338

97.492

0.442
  coiA Streptococcus pneumoniae R6

45.338

97.492

0.442
  coiA Streptococcus pneumoniae TIGR4

45.016

97.492

0.439
  coiA Streptococcus mitis NCTC 12261

45.016

97.492

0.439