Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   J7U23_RS00355 Genome accession   NZ_CP072435
Coordinates   61512..62102 (+) Length   196 a.a.
NCBI ID   WP_372588832.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24736     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56512..67102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U23_RS00330 (J7U23_00325) - 57642..58097 (-) 456 Protein_44 DUF3021 domain-containing protein -
  J7U23_RS00335 (J7U23_00330) - 58094..58485 (-) 392 Protein_45 LytTR family DNA-binding domain-containing protein -
  J7U23_RS00340 (J7U23_00335) - 58709..59014 (+) 306 WP_014621013.1 hypothetical protein -
  J7U23_RS00345 (J7U23_00340) hexB 59066..61009 (+) 1944 WP_011225282.1 DNA mismatch repair endonuclease MutL Machinery gene
  J7U23_RS00350 (J7U23_00345) - 61139..61360 (+) 222 WP_011680602.1 hypothetical protein -
  J7U23_RS00355 (J7U23_00350) ruvA 61512..62102 (+) 591 WP_372588832.1 Holliday junction branch migration protein RuvA Machinery gene
  J7U23_RS00360 (J7U23_00355) - 62109..62664 (+) 556 Protein_50 DNA-3-methyladenine glycosylase I -
  J7U23_RS00365 (J7U23_00360) cinA 62760..64031 (+) 1272 WP_100262628.1 competence/damage-inducible protein A Machinery gene
  J7U23_RS00370 (J7U23_00365) recA 64067..65206 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  J7U23_RS00375 (J7U23_00370) spx 65383..65781 (+) 399 WP_372589925.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21714.01 Da        Isoelectric Point: 5.2834

>NTDB_id=482732 J7U23_RS00355 WP_372588832.1 61512..62102(+) (ruvA) [Streptococcus thermophilus strain S24736]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=482732 J7U23_RS00355 WP_372588832.1 61512..62102(+) (ruvA) [Streptococcus thermophilus strain S24736]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTACTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444