Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   J7T96_RS00360 Genome accession   NZ_CP072434
Coordinates   63277..63867 (+) Length   196 a.a.
NCBI ID   WP_011680603.1    Uniprot ID   Q03MX8
Organism   Streptococcus thermophilus strain S24742     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58277..68867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T96_RS00340 (J7T96_00335) - 58789..59094 (+) 306 WP_002949050.1 hypothetical protein -
  J7T96_RS00345 (J7T96_00340) hexB 59146..61089 (+) 1944 WP_014607839.1 DNA mismatch repair endonuclease MutL Machinery gene
  J7T96_RS00350 (J7T96_00345) - 61219..61440 (+) 222 WP_002949052.1 hypothetical protein -
  J7T96_RS00355 (J7T96_00350) - 61505..63073 (-) 1569 Protein_49 IS3-like element ISSth1b family transposase -
  J7T96_RS00360 (J7T96_00355) ruvA 63277..63867 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA Machinery gene
  J7T96_RS00365 (J7T96_00360) - 63874..64428 (+) 555 WP_011680604.1 DNA-3-methyladenine glycosylase I -
  J7T96_RS00370 (J7T96_00365) cinA 64524..65795 (+) 1272 WP_011680605.1 competence/damage-inducible protein A Machinery gene
  J7T96_RS00375 (J7T96_00370) recA 65831..67000 (+) 1170 WP_179970786.1 recombinase RecA Machinery gene
  J7T96_RS00380 (J7T96_00375) spx 67177..67575 (+) 399 WP_207559723.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21683.98 Da        Isoelectric Point: 5.2834

>NTDB_id=482629 J7T96_RS00360 WP_011680603.1 63277..63867(+) (ruvA) [Streptococcus thermophilus strain S24742]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=482629 J7T96_RS00360 WP_011680603.1 63277..63867(+) (ruvA) [Streptococcus thermophilus strain S24742]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03MX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444