Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   IC805_RS17565 Genome accession   NZ_CP061472
Coordinates   3477077..3477373 (+) Length   98 a.a.
NCBI ID   WP_011231915.1    Uniprot ID   U2X350
Organism   Geobacillus thermoleovorans strain SURF-48B     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3472077..3482373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC805_RS17540 (IC805_17535) - 3472267..3473400 (+) 1134 WP_020278526.1 class I SAM-dependent methyltransferase -
  IC805_RS17545 (IC805_17540) - 3473484..3473726 (-) 243 WP_008879854.1 DUF2626 family protein -
  IC805_RS17550 (IC805_17545) - 3473885..3474583 (-) 699 WP_011231918.1 metalloregulator ArsR/SmtB family transcription factor -
  IC805_RS17555 (IC805_17550) comGA 3474776..3475849 (+) 1074 WP_021322348.1 competence type IV pilus ATPase ComGA Machinery gene
  IC805_RS17560 (IC805_17555) comGB 3475846..3476874 (+) 1029 WP_014196341.1 competence type IV pilus assembly protein ComGB -
  IC805_RS17565 (IC805_17560) comGC 3477077..3477373 (+) 297 WP_011231915.1 competence type IV pilus major pilin ComGC Machinery gene
  IC805_RS17570 (IC805_17565) comGD 3477363..3477800 (+) 438 WP_011231914.1 competence type IV pilus minor pilin ComGD -
  IC805_RS17575 (IC805_17570) - 3477784..3478110 (+) 327 WP_011231913.1 type II secretion system protein -
  IC805_RS17580 (IC805_17575) comGF 3478089..3478535 (+) 447 WP_014196339.1 competence type IV pilus minor pilin ComGF -
  IC805_RS17585 (IC805_17580) comGG 3478610..3478999 (+) 390 WP_014196338.1 competence type IV pilus minor pilin ComGG -
  IC805_RS17590 (IC805_17585) - 3479046..3479225 (+) 180 WP_011231910.1 YqzE family protein -
  IC805_RS17595 (IC805_17590) - 3479328..3480122 (-) 795 WP_011231909.1 YqhG family protein -
  IC805_RS17600 (IC805_17595) - 3480109..3481773 (-) 1665 WP_014196337.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10749.59 Da        Isoelectric Point: 7.2422

>NTDB_id=482492 IC805_RS17565 WP_011231915.1 3477077..3477373(+) (comGC) [Geobacillus thermoleovorans strain SURF-48B]
MNQKGFTLIEMLIVMMVISVLLLIAIPNMTKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISANGDVSESGS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=482492 IC805_RS17565 WP_011231915.1 3477077..3477373(+) (comGC) [Geobacillus thermoleovorans strain SURF-48B]
ATGAATCAAAAGGGATTCACATTGATCGAAATGTTGATCGTTATGATGGTGATTTCTGTCCTGCTGCTGATTGCCATTCC
GAATATGACAAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCGATCCAAATCAGCGCGAACGGCGATGTGAGTGAAAGTGGCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2X350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

52.747

92.857

0.49
  comGC Staphylococcus aureus MW2

41.935

94.898

0.398
  comGC Staphylococcus aureus N315

41.935

94.898

0.398