Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   IC806_RS05105 Genome accession   NZ_CP061471
Coordinates   1014225..1014521 (-) Length   98 a.a.
NCBI ID   WP_015375395.1    Uniprot ID   L8A1X1
Organism   Geobacillus zalihae strain SURF-114     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1009225..1019521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC806_RS05070 (IC806_05070) - 1009825..1011489 (+) 1665 WP_060787690.1 DEAD/DEAH box helicase -
  IC806_RS05075 (IC806_05075) - 1011476..1012270 (+) 795 WP_060787691.1 YqhG family protein -
  IC806_RS05080 (IC806_05080) - 1012373..1012552 (-) 180 WP_011231910.1 YqzE family protein -
  IC806_RS05085 (IC806_05085) comGG 1012598..1012987 (-) 390 WP_081132457.1 competence type IV pilus minor pilin ComGG -
  IC806_RS05090 (IC806_05090) comGF 1013063..1013551 (-) 489 WP_223813726.1 competence type IV pilus minor pilin ComGF -
  IC806_RS05095 (IC806_05095) - 1013488..1013814 (-) 327 WP_042380986.1 type II secretion system protein -
  IC806_RS05100 (IC806_05100) comGD 1013798..1014235 (-) 438 WP_033004731.1 competence type IV pilus minor pilin ComGD -
  IC806_RS05105 (IC806_05105) comGC 1014225..1014521 (-) 297 WP_015375395.1 competence type IV pilus major pilin ComGC Machinery gene
  IC806_RS05110 (IC806_05110) comGB 1014709..1015737 (-) 1029 WP_060787692.1 competence type IV pilus assembly protein ComGB -
  IC806_RS05115 (IC806_05115) comGA 1015734..1016807 (-) 1074 WP_015375397.1 competence type IV pilus ATPase ComGA Machinery gene
  IC806_RS05120 (IC806_05120) - 1017000..1017698 (+) 699 WP_020753839.1 metalloregulator ArsR/SmtB family transcription factor -
  IC806_RS05125 (IC806_05125) - 1017854..1018096 (+) 243 WP_008879854.1 DUF2626 family protein -
  IC806_RS05130 (IC806_05130) - 1018180..1019313 (-) 1134 WP_081132472.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10761.58 Da        Isoelectric Point: 7.2422

>NTDB_id=482409 IC806_RS05105 WP_015375395.1 1014225..1014521(-) (comGC) [Geobacillus zalihae strain SURF-114]
MNQKGFTLIEMLIVMMVISVLLLIAIPNITKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISTNGDVSESGS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=482409 IC806_RS05105 WP_015375395.1 1014225..1014521(-) (comGC) [Geobacillus zalihae strain SURF-114]
ATGAATCAAAAGGGATTCACATTGATCGAAATGTTGATCGTGATGATGGTGATTTCTGTTCTGTTGCTGATTGCCATTCC
GAATATAACAAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCGATCCAAATCAGCACGAACGGCGATGTGAGTGAAAGTGGCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L8A1X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

53.125

97.959

0.52
  comGC Staphylococcus aureus MW2

43.011

94.898

0.408
  comGC Staphylococcus aureus N315

43.011

94.898

0.408